{"id":"W3031385810","doi":"10.1186/s42523-020-0021-3","title":"Variation in gut bacterial composition is associated with Haemonchus contortus parasite infection of sheep","year":2020,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Helminth infection and control","field":"Veterinary","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Australian Research Council; Monash University; University of Technology Sydney; Australian Society for Parasitology; University of Alberta","keywords":"Haemonchus contortus; Biology; Firmicutes; Bacteroidetes; Parasite hosting; Feces; Relative species abundance; Eggs per gram; Gut flora; Gastrointestinal tract; Intestinal parasite; Microbiome; Microbiology; Zoology; Veterinary medicine; Helminths; Abundance (ecology); Immunology; Bacteria; Ecology; 16S ribosomal RNA; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002464875,0.000183966,0.0003251877,0.0006384063,0.0002503178,0.0004535846,0.0001264877,0.0004341508,0.0008248031],"category_scores_gemma":[0.0007292489,0.0002269784,0.0001655422,0.0003452899,0.0003699347,0.000238112,0.0002722229,0.000348589,0.0002058568],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000181985,"about_ca_system_score_gemma":0.00009985306,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009812093,"about_ca_topic_score_gemma":0.001826692,"domain_scores_codex":[0.9997117,0.00005126187,0.00003208308,0.00008322392,0.00006234503,0.00005943765],"domain_scores_gemma":[0.9993735,0.0001010639,0.0002817423,0.00002411162,0.00009440064,0.0001252428],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001130879,0.0001400912,0.7392535,0.0001091862,0.00008575471,0.0004253413,0.000649124,0.00006631383,0.2554188,0.00002461511,0.00009046936,0.002605786],"study_design_scores_gemma":[0.000001486315,0.0001763031,0.9984484,0.000004687,0.000009019423,0.0001878602,0.0001401145,0.00004102096,0.000921422,0.000007314719,0.00006029213,0.00000199657],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996336,0.0001296603,0.00002803141,0.000006058721,0.000001218391,0.000003294698,0.0000672506,0.000001125107,0.0001297916],"genre_scores_gemma":[0.9994393,0.0001045411,0.0001032002,0.00001042973,0.000003585671,0.00001074901,0.0001680514,0.000001332201,0.0001588503],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009812093,"threshold_uncertainty_score":0.002759278,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03388796006438899,"score_gpt":0.2761642964837431,"score_spread":0.2422763364193541,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}