{"id":"W3031385810","doi":"10.1186/s42523-020-0021-3","title":"Variation in gut bacterial composition is associated with Haemonchus contortus parasite infection of sheep","year":2020,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Helminth infection and control","field":"Veterinary","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Australian Research Council; Monash University; University of Technology Sydney; Australian Society for Parasitology; University of Alberta","keywords":"Haemonchus contortus; Biology; Firmicutes; Bacteroidetes; Parasite hosting; Feces; Relative species abundance; Eggs per gram; Gut flora; Gastrointestinal tract; Intestinal parasite; Microbiome; Microbiology; Zoology; Veterinary medicine; Helminths; Abundance (ecology); Immunology; Bacteria; Ecology; 16S ribosomal RNA; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000119185,0.0001496078,0.0002880138,0.0001107583,0.00004753184,0.00003430663,0.00005504743,0.0001398837,0.0005267205],"category_scores_gemma":[0.00003244532,0.0001497241,0.00006751918,0.0003538798,0.00003127617,0.0002261636,0.0000213614,0.0001254756,0.00008939298],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001177865,"about_ca_system_score_gemma":0.00004028896,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007651294,"about_ca_topic_score_gemma":0.0001493517,"domain_scores_codex":[0.9989852,0.0001283354,0.0003573469,0.0002485749,0.00009276596,0.0001878118],"domain_scores_gemma":[0.9994881,0.00003730751,0.0002127445,0.00009258469,0.0001046172,0.00006470972],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001916926,0.0001267687,0.01072803,0.00002291514,0.00007859151,0.0000296981,0.0009065119,0.000004494258,0.9855402,0.00004974993,0.0001428706,0.0004533128],"study_design_scores_gemma":[0.003973925,0.003218332,0.9676777,0.00009199858,0.00006683378,0.00005609026,0.00001421142,0.0012938,0.02149412,0.000007727979,0.001829836,0.0002754337],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979437,0.00001076693,0.0004214844,0.0005316167,0.0001233779,0.0003018173,0.0001042957,0.00008760281,0.000475318],"genre_scores_gemma":[0.9991724,0.000003599373,0.00004488357,0.0004862566,0.0001325983,0.0000155564,0.0001152893,0.00001828511,0.00001109359],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.964046,"threshold_uncertainty_score":0.6105572,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03388796006438899,"score_gpt":0.2761642964837431,"score_spread":0.2422763364193541,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}