{"id":"W3031906185","doi":"10.3389/fimmu.2020.01020","title":"Regional Dichotomy in Enteric Mucosal Immune Responses to a Persistent Mycobacterium avium ssp. paratuberculosis Infection","year":2020,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; University of Guelph; University of Saskatchewan","funders":"Agriculture and Agri-Food Canada; Killam Trusts; Genome British Columbia; Ministry of Agriculture - Saskatchewan; Beef Cattle Research Council; Canadian Institutes of Health Research; Genome Canada","keywords":"Biology; Immune system; Paratuberculosis; Lamina propria; Immunology; Mesenteric lymph nodes; Microbiology; Intestinal mucosa; Mycobacterium; Genetics; Epithelium; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001516886,0.0001597635,0.0002596178,0.0003413186,0.0001605509,0.0004647516,0.0001227417,0.0003706212,0.0008700337],"category_scores_gemma":[0.0002660453,0.000166413,0.0001869821,0.000193316,0.0003038302,0.0002267682,0.0003403052,0.0005521915,0.0002065727],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002005264,"about_ca_system_score_gemma":0.0001400963,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005088217,"about_ca_topic_score_gemma":0.0007496554,"domain_scores_codex":[0.9997776,0.00001878132,0.00001112455,0.00008437762,0.00003477352,0.00007340468],"domain_scores_gemma":[0.9997913,0.00003667886,0.0000627124,0.0000106256,0.00002773507,0.00007094809],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000590858,0.00004873665,0.02427813,0.0001102663,0.00002460773,0.0001650325,0.0002173196,0.00005710785,0.971504,0.00004487758,0.00007008506,0.002888938],"study_design_scores_gemma":[0.000009837821,0.0005108353,0.970975,0.00002603478,0.00003652529,0.0004979745,0.0005747722,0.0002427248,0.02623023,0.00008312486,0.0008034835,0.000009308623],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984042,0.0006236206,0.0002494265,0.00002289111,0.000005539375,0.00000752667,0.0003247796,0.000009860201,0.0003521293],"genre_scores_gemma":[0.9985225,0.0003064241,0.0002578878,0.00005831832,0.00000634722,0.00002090044,0.0004388408,0.00000506143,0.0003838732],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008700337,"threshold_uncertainty_score":0.002910495,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02391428495004738,"score_gpt":0.2765376542385279,"score_spread":0.2526233692884805,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}