{"id":"W3032072823","doi":"10.1186/s42523-020-00025-9","title":"Metagenomic analysis suggests broad metabolic potential in extracellular symbionts of the bivalve Thyasira cf. gouldi","year":2020,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Marine Biology and Ecology Research","field":"Earth and Planetary Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Metagenomics; Ciona intestinalis; Symbiosis; Evolutionary biology; Gene; Ecology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004046002,0.0001490666,0.0004007139,0.0002037131,0.0001072964,0.00002056772,0.0005712223,0.0001629874,0.003742777],"category_scores_gemma":[0.0000478157,0.0001038984,0.000277966,0.001284208,0.000242565,0.00008746654,0.00009370773,0.0002754332,0.0002895729],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003883412,"about_ca_system_score_gemma":0.00006848967,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002385001,"about_ca_topic_score_gemma":0.004253908,"domain_scores_codex":[0.9985152,0.000288824,0.000333562,0.0003609971,0.0001066148,0.0003948318],"domain_scores_gemma":[0.9994792,0.00006456704,0.0001117672,0.0002139946,0.00003175164,0.00009874375],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001460767,0.00002810423,0.8772371,0.00001288945,0.0003504998,0.00002085519,0.0001259618,0.000213909,0.1211085,0.0000315028,0.00009404982,0.0006305655],"study_design_scores_gemma":[0.0002701884,0.0001173322,0.9923362,0.000001905717,0.0002123013,0.000007895997,0.00004913451,0.00122608,0.004547749,0.00002486255,0.001090135,0.0001162395],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955513,0.002604906,0.000005207907,0.001101695,0.00009994877,0.000190318,0.00009437195,0.00001253472,0.0003396754],"genre_scores_gemma":[0.9992185,0.00009039608,0.00006994416,0.0002165116,0.00005254745,0.000001005018,0.00008625587,0.000003429272,0.0002614186],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1165607,"threshold_uncertainty_score":0.9971679,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01503272289545445,"score_gpt":0.2212100096041532,"score_spread":0.2061772867086987,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}