{"id":"W3032582312","doi":"10.3390/v12060586","title":"Are We Ready for NGS HIV Drug Resistance Testing? The Second “Winnipeg Consensus” Symposium","year":2020,"lang":"en","type":"article","venue":"Viruses","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver; University of British Columbia; University of Manitoba; Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; Consejo Nacional de Ciencia y Tecnología; Public Health Agency; Public Health Agency of Canada","keywords":"HIV drug resistance; Sanger sequencing; Drug resistance; Human immunodeficiency virus (HIV); Medicine; DNA sequencing; Computational biology; Virology; Antiretroviral therapy; Biology; Viral load; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000121351,0.0002034678,0.0003006464,0.00003590228,0.0001914844,0.00003485682,0.0001150376,0.00004686173,0.0001401703],"category_scores_gemma":[0.0002858404,0.00013163,0.00006771709,0.0002286776,0.00009596328,0.00003836722,0.00003830273,0.0001223271,0.0002292684],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004667979,"about_ca_system_score_gemma":0.0001248674,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000314276,"about_ca_topic_score_gemma":0.00007717097,"domain_scores_codex":[0.9988968,0.00003549439,0.0002690536,0.0003249348,0.0001938159,0.0002798843],"domain_scores_gemma":[0.9987279,0.0005735332,0.0001675139,0.0002580291,0.0001250494,0.0001480197],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003975845,0.00009503368,0.01986827,0.0003170188,0.0001830938,0.000119268,0.002140794,8.445863e-7,0.01123798,0.0003388897,0.965137,0.0001642394],"study_design_scores_gemma":[0.001518433,0.0000316785,0.001192936,0.0001972364,0.000140427,0.00001281101,0.0006876055,0.00003604287,0.02362627,0.0001123903,0.972276,0.000168227],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"other","genre_scores_codex":[0.3866769,0.004151742,0.00006235799,0.5806711,0.0003405032,0.002694688,0.0006143504,0.0006034647,0.02418482],"genre_scores_gemma":[0.4273771,0.0001780212,0.01389034,0.05084985,0.001188362,0.0005197988,0.0001080816,0.0001824453,0.505706],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.5298213,"threshold_uncertainty_score":0.5367714,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09013228476923313,"score_gpt":0.2968887581965474,"score_spread":0.2067564734273143,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}