{"id":"W3032903090","doi":"10.1093/cid/ciaa737","title":"Oral Capsulized Fecal Microbiota Transplantation for Eradication of Carbapenemase-producing <i>Enterobacteriaceae</i> Colonization With a Metagenomic Perspective","year":2020,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"Johnson and Johnson; Human Frontier Science Program; Canadian Institute for Advanced Research","keywords":"Medicine; Microbiome; Carriage; Metagenomics; Enterobacteriaceae; Antibiotics; Internal medicine; Feces; Microbiology; Fecal bacteriotherapy; Antibiotic resistance; Biology; Clostridium difficile; Bioinformatics; Escherichia coli; Pathology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001932281,0.0001934298,0.0005982813,0.00008384122,0.0000994078,0.00003157363,0.00008644249,0.0001099236,0.00007334499],"category_scores_gemma":[0.0007942925,0.0001656767,0.0002776789,0.0003714223,0.0002057954,0.00008488148,0.00002198745,0.0001854721,0.0000117277],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001419458,"about_ca_system_score_gemma":0.0004113517,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008489163,"about_ca_topic_score_gemma":0.00004001022,"domain_scores_codex":[0.9982783,0.0001525491,0.0005745309,0.0005541969,0.0002010053,0.0002394203],"domain_scores_gemma":[0.998391,0.0002921557,0.0002265243,0.000238015,0.0005346449,0.000317713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.02302482,0.004861447,0.5722287,0.002864912,0.002260924,0.00008663585,0.002176004,0.000549176,0.3840258,0.000467916,0.003090583,0.004363089],"study_design_scores_gemma":[0.04750663,0.01971409,0.7715626,0.0006584997,0.008668527,0.000113892,0.00106954,0.004492681,0.1425895,0.0001245947,0.002375769,0.001123676],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9936246,0.0003027798,0.002253202,0.001702335,0.0001089313,0.001492915,0.0003149469,0.0001034625,0.00009677478],"genre_scores_gemma":[0.9979174,0.0003553419,0.0002247935,0.0005067868,0.0003380808,0.00008725478,0.0004949289,0.00004120443,0.00003422488],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2414363,"threshold_uncertainty_score":0.6756101,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04693117775281439,"score_gpt":0.3539256682931479,"score_spread":0.3069944905403335,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}