{"id":"W3033468363","doi":"10.1128/mra.00429-20","title":"Draft Genome Sequence of an Extended-Spectrum β-Lactamase-Producing Klebsiella oxytoca Strain Bearing <i>mcr-9</i> from Qatar","year":2020,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Sidra Medicine","keywords":"Klebsiella oxytoca; Genome; Whole genome sequencing; Biology; Strain (injury); Gene; Opportunistic pathogen; Microbiology; Colistin; Genetics; Enterobacteriaceae; Antimicrobial; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002520175,0.0003509385,0.0004192342,0.00004527804,0.0001313082,0.00003853115,0.0007323026,0.0002898516,0.0001101758],"category_scores_gemma":[0.00007247931,0.0003621954,0.000114442,0.0001491486,0.000382978,0.0000155267,0.0003400993,0.0002251907,0.00003669],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003902568,"about_ca_system_score_gemma":0.0001043582,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008436359,"about_ca_topic_score_gemma":0.00006091154,"domain_scores_codex":[0.9975033,0.0001892392,0.0005424978,0.001081228,0.0001125372,0.0005712271],"domain_scores_gemma":[0.9986601,0.00001699503,0.0003059859,0.0007836696,0.00006750697,0.000165709],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003212974,0.00008573429,0.007660571,0.00003593369,0.0001510379,0.00001799411,0.0003945036,0.0001081308,0.990373,0.000008337342,0.0006412735,0.0002022175],"study_design_scores_gemma":[0.002074783,0.002085558,0.007712709,0.0001197383,0.0001133013,0.00005066607,0.001357888,0.00009531169,0.5197877,0.00005172075,0.4654068,0.00114386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920875,0.0005569909,0.0005946395,0.0004274193,0.0001165482,0.0003276208,0.005502911,0.00003730676,0.0003490796],"genre_scores_gemma":[0.9787619,0.00009635679,0.001968203,0.001544569,0.000401271,0.000006566858,0.01684556,0.00005649721,0.000319117],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4705853,"threshold_uncertainty_score":0.999883,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0183628215867945,"score_gpt":0.2414758349835297,"score_spread":0.2231130133967352,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}