{"id":"W3033505894","doi":"10.1097/qad.0000000000002521","title":"Phylogenetics: an added ingredient in HIV prevention","year":2020,"lang":"en","type":"article","venue":"AIDS","topic":"HIV/AIDS Research and Interventions","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Pandemic; Medicine; Population; Transmission (telecommunications); Environmental health; Public health; Viral load; Treatment as prevention; Pre-exposure prophylaxis; Incidence (geometry); Developing country; Men who have sex with men; Immunology; Demography; Human immunodeficiency virus (HIV); Antiretroviral therapy; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19); Disease; Biology; Syphilis","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001197244,0.00005822337,0.0001176388,0.00008640685,0.00002087517,0.00001119407,0.0000693971,0.00003914126,0.001099016],"category_scores_gemma":[0.0001741904,0.00005299408,0.00006775078,0.000212341,0.00002811821,0.000062857,0.00003673842,0.0001500407,0.0002698721],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002638851,"about_ca_system_score_gemma":0.00004528126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002328018,"about_ca_topic_score_gemma":0.0000214743,"domain_scores_codex":[0.999264,0.00006465714,0.0001707187,0.000160523,0.0001674874,0.0001726159],"domain_scores_gemma":[0.9995776,0.000009531795,0.00001922735,0.0001346632,0.00004502477,0.0002139521],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.000695182,0.002147329,0.2861106,0.0004235957,0.0001860235,0.0002184048,0.00403397,0.00003111687,0.1769663,0.003025144,0.1216697,0.4044926],"study_design_scores_gemma":[0.02063986,0.115688,0.3509414,0.001597461,0.0002811835,0.0000683886,0.00651408,0.06881973,0.0992186,0.002921735,0.3322974,0.001012208],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9767595,0.0002225139,0.001497694,0.001743345,0.00001745829,0.0003003513,0.00001309909,0.00004162865,0.01940443],"genre_scores_gemma":[0.9930475,0.00003100029,0.001397152,0.0002510746,0.0001400669,0.00002469574,0.00008757586,0.000010266,0.005010685],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4034804,"threshold_uncertainty_score":0.9998141,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0481705407652798,"score_gpt":0.3551130984105169,"score_spread":0.3069425576452371,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}