{"id":"W3033832948","doi":"10.1186/s12866-020-01829-0","title":"Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; Hospital for Sick Children; Public Health Ontario; University of British Columbia; SickKids Foundation; University of Toronto; McMaster University; University of Manitoba; Children's Hospital Research Institute of Manitoba","funders":"Canadian Institutes of Health Research; Reseau canadien de recherche respiratoire; Children's Hospital Research Institute of Manitoba; Tartu Ülikool; University of Alberta; University of Toronto; Canadian Lung Association; McMaster University; Heart and Stroke Foundation of Canada","keywords":"Biology; Mycobiota; Microbiome; Breastfeeding; Microbiology; Population; Bacteria; Medical microbiology; Environmental health; Ecology; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000247028,0.0001376448,0.0002624978,0.00005172758,0.0002511819,0.0000271219,0.0001451343,0.00008947159,0.00008608818],"category_scores_gemma":[0.00001212975,0.0001016172,0.00002958148,0.00006934776,0.00009016274,0.00004425525,0.00004786551,0.0002289738,0.00002524864],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006514212,"about_ca_system_score_gemma":0.000009091196,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001003286,"about_ca_topic_score_gemma":0.002090794,"domain_scores_codex":[0.9987519,0.0003861377,0.0002714525,0.0002985697,0.00003932852,0.0002525709],"domain_scores_gemma":[0.9996269,0.00006462116,0.0001146183,0.0001442682,0.00000636303,0.00004322813],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001020939,0.0002353069,0.9598457,0.00001338376,0.00001390773,0.000006892185,0.003620127,1.865167e-7,0.03539936,0.000008290416,0.0006825493,0.00007225924],"study_design_scores_gemma":[0.001768927,0.0007798578,0.9915976,0.00002174135,0.00003643187,0.00007516398,0.001309731,0.00000839635,0.0006183061,0.000004809096,0.00364101,0.0001380168],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976783,0.00007940365,0.000005688101,0.000981921,0.0001075366,0.0008586771,0.000166204,0.00002115617,0.0001010812],"genre_scores_gemma":[0.9965283,0.000006533392,0.0001045411,0.003068369,0.00009441734,0.00003109004,0.0001412219,0.0000143528,0.00001112385],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03478105,"threshold_uncertainty_score":0.4143829,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02410358872160562,"score_gpt":0.2775081784626119,"score_spread":0.2534045897410063,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}