{"id":"W3033956961","doi":"10.1101/2020.06.04.135657","title":"Potential for virus endogenization in humans through testicular germ cell infection: the case of HIV","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Centre National de la Recherche Scientifique; National Cancer Institute; National Institutes of Health; U.S. Department of Health and Human Services; Sidaction; Institut National de la Santé et de la Recherche Médicale","keywords":"Biology; Germline; Virology; Population; Retrovirus; Endogenous retrovirus; Virus; Germ cell; Macaque; Genome; Immunology; Genetics; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001775876,0.0001101809,0.0001384965,0.0002614335,0.0002626795,0.0006256975,0.0001705362,0.0003919433,0.001109145],"category_scores_gemma":[0.0001912536,0.00009352633,0.0001302306,0.0001828338,0.0004703516,0.0002559993,0.0001975646,0.0003380455,0.0001479513],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001607192,"about_ca_system_score_gemma":0.00009817717,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005120155,"about_ca_topic_score_gemma":0.0004445066,"domain_scores_codex":[0.9998986,0.00003823348,0.000003357041,0.00002153171,0.00001391101,0.00002440934],"domain_scores_gemma":[0.9999043,0.0000230207,0.00003266268,0.00001472129,0.00001009036,0.00001515779],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001088101,0.0002388937,0.5241798,0.0009278272,0.0002704443,0.03144702,0.002574168,0.000626988,0.3196134,0.01468162,0.00190658,0.1024452],"study_design_scores_gemma":[0.00007724463,0.002418381,0.5507285,0.0004079524,0.0005576484,0.2143201,0.006153518,0.003747252,0.1421714,0.01512247,0.06420329,0.00009229396],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9685628,0.02570915,0.001913283,0.000466152,0.00004515813,0.00001176236,0.00008052579,0.00001841373,0.003192701],"genre_scores_gemma":[0.9958242,0.003171038,0.0004808793,0.0000837858,0.00005199269,0.000002537196,0.00002771883,0.000001710341,0.0003560893],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001109145,"threshold_uncertainty_score":0.003710508,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0195998560872099,"score_gpt":0.2452244636574198,"score_spread":0.2256246075702099,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}