{"id":"W3033991991","doi":"10.1111/1462-2920.15113","title":"<scp>DNA</scp> <scp>tandem</scp> repeats contribute to the genetic diversity of <i>Brevibacterium aurantiacum</i> phages","year":2020,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Prophage; Siphoviridae; Genome; Genetics; Tandem repeat; Integrase; Genome size; Virulence; Gene; Bacteriophage; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001626466,0.000366605,0.0004505668,0.0000322969,0.0004203146,0.00003125896,0.0007866144,0.0001824509,0.001155972],"category_scores_gemma":[0.0001034416,0.0003001574,0.0002445954,0.000182496,0.0005553166,0.0001682923,0.002134066,0.000316656,0.00273797],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001709523,"about_ca_system_score_gemma":0.00000785941,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001366913,"about_ca_topic_score_gemma":0.0000617603,"domain_scores_codex":[0.9978405,0.0002182617,0.0004753249,0.0007200031,0.0001155713,0.0006303374],"domain_scores_gemma":[0.9987408,0.0002703868,0.0002706212,0.0004488304,0.000005128996,0.0002642282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00000818472,0.0001156602,0.01850702,0.000007820957,0.00006967143,0.00001881468,0.00146472,0.00009980185,0.9375204,0.000001308808,0.04169819,0.0004883691],"study_design_scores_gemma":[0.0005880725,0.0003431702,0.2709934,0.00001311124,0.0001009052,0.0001394201,0.0005431647,0.00001009207,0.2683344,0.000005613359,0.4588354,0.00009316432],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953682,0.0003379899,0.0004707412,0.0009449506,0.0004272924,0.0006273027,0.0008508741,0.00004725975,0.0009253247],"genre_scores_gemma":[0.9927095,0.0002853442,0.0004604253,0.004332793,0.0001302184,0.00001714617,0.0001463729,0.0000333007,0.001884955],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.669186,"threshold_uncertainty_score":0.999945,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008670283145612983,"score_gpt":0.1952297542242159,"score_spread":0.1865594710786029,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}