{"id":"W3034105548","doi":"10.1038/s42003-020-1005-2","title":"Arginine GlcNAcylation of Rab small GTPases by the pathogen Salmonella Typhimurium","year":2020,"lang":"en","type":"article","venue":"Communications Biology","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fundamental Research Funds for the Central Universities; Huazhong Agricultural University; Institute of Infection and Immunity; Hubei Provincial Department of Education","keywords":"Rab; Effector; Salmonella; Virulence; Salmonella enterica; GTPase; Golgi apparatus; Biology; Arginine; Cell biology; Type three secretion system; Secretion; Pathogen; Microbiology; Intracellular parasite; Intracellular; Biochemistry; Bacteria; Amino acid; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001214026,0.00008543207,0.0001090701,0.00001372788,0.00009141819,0.000004264255,0.000554769,0.0001169721,0.00002373583],"category_scores_gemma":[0.00005954743,0.00006755022,0.00006901422,0.00009823268,0.0002342349,0.000001540002,0.0001400034,0.00009021538,0.000008744556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003316462,"about_ca_system_score_gemma":0.00002963061,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002376945,"about_ca_topic_score_gemma":0.00004082036,"domain_scores_codex":[0.9993654,0.0001397078,0.000213294,0.0001532011,0.00002894447,0.00009937389],"domain_scores_gemma":[0.9989786,0.00003594524,0.0001027539,0.0007681435,0.00007655133,0.0000380735],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003878796,0.00003873709,0.006422768,0.000005886952,0.00002702145,7.76041e-8,0.0001096069,0.000009857319,0.9908288,0.0007872872,0.0003520372,0.001379091],"study_design_scores_gemma":[0.0006692377,0.0004357743,0.004126251,0.000007536415,0.00006672321,0.000005383848,0.0002108406,0.001134328,0.1879052,0.0003410433,0.8048639,0.000233748],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9233038,0.01865205,0.04206437,0.01129285,0.00009212528,0.0004489501,0.0002910362,0.00003431194,0.003820466],"genre_scores_gemma":[0.9853085,0.001707719,0.0006719168,0.000431235,0.0000582427,0.00001894788,0.01172211,0.00001025069,0.0000710965],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8045119,"threshold_uncertainty_score":0.2754618,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03567843455393574,"score_gpt":0.2560068820907838,"score_spread":0.220328447536848,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}