{"id":"W3034130789","doi":"10.1016/j.xcrm.2020.100036","title":"Identification of SARS-CoV-2 Vaccine Epitopes Predicted to Induce Long-Term Population-Scale Immunity","year":2020,"lang":"en","type":"article","venue":"Cell Reports Medicine","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Cancer Institute; National Institutes of Health; Stand Up To Cancer Canada; American Association for Cancer Research","keywords":"Epitope; Biology; Furin; Population; Virology; Computational biology; Proteome; Major histocompatibility complex; Acquired immune system; Infectivity; Genetics; Immunity; Coronavirus; Immune system; Virus; Antibody; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty); Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008841314,0.0002826485,0.0007925782,0.0003389341,0.00009977041,0.00001666829,0.0002448158,0.0001822096,0.00005573403],"category_scores_gemma":[0.001545869,0.0002336602,0.0001194884,0.001147964,0.0001028974,0.0001381583,0.0001535105,0.0004542036,0.00003408961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001138678,"about_ca_system_score_gemma":0.0002076209,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007972961,"about_ca_topic_score_gemma":0.00005959018,"domain_scores_codex":[0.9962672,0.00009868068,0.001553043,0.0006351072,0.001065484,0.0003804704],"domain_scores_gemma":[0.9974595,0.000114964,0.0005868414,0.001048484,0.0006170632,0.0001731276],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002390277,0.0001723616,0.3110758,0.0004256776,0.0000345161,0.0003424325,0.001056816,4.912374e-7,0.6819448,0.000002459067,0.00218341,0.002522203],"study_design_scores_gemma":[0.001024489,0.0005075037,0.3721784,0.0002324974,0.00014186,0.000118481,0.0001220063,0.00007788659,0.6221808,0.00002970369,0.003252628,0.0001337334],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908431,0.0006028987,0.001610157,0.003597201,0.0004220114,0.001216009,0.00000696603,0.0001502184,0.001551474],"genre_scores_gemma":[0.9840773,0.00001863839,0.00009750001,0.0148669,0.0006227614,0.00004698732,0.000120116,0.00005162861,0.00009817343],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06110252,"threshold_uncertainty_score":0.9528388,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05445846560770537,"score_gpt":0.3566110080903357,"score_spread":0.3021525424826303,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}