{"id":"W3034274180","doi":"10.3390/v12060645","title":"Quality Control of Next-Generation Sequencing-Based HIV-1 Drug Resistance Data in Clinical Laboratory Information Systems Framework","year":2020,"lang":"en","type":"review","venue":"Viruses","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Public Health Agency of Canada","funders":"","keywords":"HIV drug resistance; Human immunodeficiency virus (HIV); Quality (philosophy); Computer science; Data mining; Medicine; Data science; Viral load; Virology; Antiretroviral therapy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001813963,0.0003404602,0.002224642,0.0002118301,0.00003946687,0.0000565872,0.0002931432,0.0003573162,0.00001714881],"category_scores_gemma":[0.00211669,0.0002665819,0.0001620537,0.0005502256,0.00006971335,0.0004308439,0.00005523533,0.0005024451,0.0001772937],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003642659,"about_ca_system_score_gemma":0.003117525,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003990862,"about_ca_topic_score_gemma":0.0000908911,"domain_scores_codex":[0.9956481,0.0008477461,0.002425462,0.0004006747,0.0004929388,0.0001850056],"domain_scores_gemma":[0.9965159,0.00102476,0.001163668,0.0009944981,0.000171783,0.0001294333],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001463594,0.001574312,0.01882548,0.2515092,0.004200344,0.0004255623,0.002083975,0.00006402602,0.00002749348,0.007480436,0.1526726,0.5596729],"study_design_scores_gemma":[0.001033597,0.00001569314,0.00002914156,0.01507622,0.0005381813,7.573213e-7,0.00005622151,0.0002808735,0.000006535697,0.000002256108,0.9827452,0.0002153756],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00005076843,0.9933124,0.002181545,0.0004156129,0.0004271856,0.001666125,0.001778903,0.0000668848,0.0001005391],"genre_scores_gemma":[0.001218625,0.9902784,0.002720776,0.0006768361,0.000408293,0.0001621319,0.004358512,0.00003609569,0.0001403831],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8300725,"threshold_uncertainty_score":0.9999787,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2480234086914881,"score_gpt":0.4199127119882753,"score_spread":0.1718893032967873,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}