{"id":"W3034412992","doi":"10.1093/infdis/jiaa108","title":"Human Immunodeficiency Virus Phylogenetics in the United States—and Elsewhere","year":2020,"lang":"en","type":"letter","venue":"The Journal of Infectious Diseases","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"ca_institutions":"AIDS Vancouver","funders":"","keywords":"Human immunodeficiency virus (HIV); Virology; Phylogenetics; Biology; Medicine; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008719823,0.0001635397,0.0002241952,0.0005813603,0.001733305,0.0009847648,0.0004012742,0.004149172,0.002218509],"category_scores_gemma":[0.002473724,0.0001441734,0.0001951383,0.0008202728,0.0006219898,0.001069519,0.0007919755,0.002953673,0.000412866],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001705258,"about_ca_system_score_gemma":0.001702804,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03407253,"about_ca_topic_score_gemma":0.08657068,"domain_scores_codex":[0.9994475,0.0001614136,0.00006492398,0.0000583915,0.0000946088,0.000173146],"domain_scores_gemma":[0.9985467,0.0003492874,0.0002357691,0.00006273524,0.000293418,0.0005119987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.000402021,0.0001635496,0.1532349,0.0001562582,0.00007585104,0.01057016,0.003522337,0.000220659,0.002068186,0.01105146,0.7244402,0.0940944],"study_design_scores_gemma":[0.00008074187,0.0001488131,0.1898432,0.001198169,0.0001077546,0.008816143,0.01145111,0.0006773832,0.00066647,0.008368321,0.7785827,0.00005911834],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.09406458,0.01711713,0.0002602682,0.8329986,0.0169405,0.00002061941,0.000527921,0.0000243635,0.03804607],"genre_scores_gemma":[0.3653879,0.009013531,0.0004500769,0.5937833,0.01687324,0.00003409316,0.0002598336,0.00002334781,0.01417468],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.03407253,"threshold_uncertainty_score":0.06774837,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01431712364236098,"score_gpt":0.2627292095314394,"score_spread":0.2484120858890784,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}