{"id":"W3034537043","doi":"10.1101/2020.06.13.149070","title":"Comparative genomics of <i>Chlamydomonas</i>","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Algal biology and biofuel production","field":"Energy","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Environment Research Council; Biotechnology and Biological Sciences Research Council; NERC Biomolecular Analysis Facility","keywords":"Chlamydomonas reinhardtii; Biology; Genome; Chlamydomonas; Comparative genomics; Genetics; Gene; Functional genomics; Genomics; Mating type; Transposable element; Multicellular organism; Computational biology; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001348378,0.0002512562,0.0002197758,0.0004905538,0.0003501604,0.0004203227,0.0002803251,0.0002033589,0.0008234368],"category_scores_gemma":[0.0002959354,0.0001357158,0.0003494413,0.0006193423,0.0001085748,0.0001465344,0.0003116834,0.0003053085,0.0003580966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006053275,"about_ca_system_score_gemma":0.0006951814,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0120885,"about_ca_topic_score_gemma":0.0124233,"domain_scores_codex":[0.999878,0.000007800476,0.000007100274,0.00005526992,0.00002576361,0.00002599742],"domain_scores_gemma":[0.9998277,0.00003091584,0.0000347394,0.00002257391,0.00004246014,0.00004162912],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001023536,0.00001062741,0.002860992,0.00009956295,0.00002170843,0.00009938783,0.0001186514,0.0002134396,0.9914465,0.0001703268,0.0001410881,0.004715358],"study_design_scores_gemma":[0.00002683089,0.0004035816,0.618035,0.0001464855,0.0002622182,0.001326403,0.0005567621,0.003831719,0.3368082,0.0004925383,0.03805572,0.00005455194],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9852426,0.00138682,0.004257679,0.00006146709,0.00002114151,0.00002536836,0.00616541,0.0002324822,0.002607],"genre_scores_gemma":[0.961507,0.0006048544,0.01214119,0.0001167838,0.000009066242,0.00004291144,0.02303049,0.000125518,0.002422234],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0120885,"threshold_uncertainty_score":0.02403629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0263643087846343,"score_gpt":0.2320750893266415,"score_spread":0.2057107805420072,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}