{"id":"W3034729528","doi":"10.1093/infdis/jiaa107","title":"Addressing Ethical Challenges in US-Based HIV Phylogenetic Research","year":2020,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"HIV/AIDS Research and Interventions","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Phylogenetic tree; Human immunodeficiency virus (HIV); Scholarship; Public health; Data sharing; Stigma (botany); Biology; Medicine; Family medicine; Political science; Alternative medicine; Genetics; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00131795,0.00008996194,0.0002531915,0.0002913573,0.0001341995,0.00003179533,0.0001902988,0.00008178949,0.0003896818],"category_scores_gemma":[0.003788906,0.00005633096,0.0001966416,0.0004037228,0.0002545005,0.00005286964,0.00005461859,0.001491374,0.00004941868],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009111862,"about_ca_system_score_gemma":0.0004227615,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001859808,"about_ca_topic_score_gemma":0.00004348799,"domain_scores_codex":[0.9974316,0.001076208,0.0003571333,0.0001024227,0.0007342244,0.0002983621],"domain_scores_gemma":[0.9981203,0.0007337532,0.00009480919,0.000166395,0.0004557698,0.0004289498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0102865,0.006175776,0.6141532,0.003097309,0.0008977464,0.002291237,0.006601104,0.002899612,0.04096367,0.0007635723,0.1636039,0.1482663],"study_design_scores_gemma":[0.02051808,0.04911179,0.8590563,0.007753412,0.0008127802,0.001114773,0.006189318,0.01857924,0.008994187,0.004241943,0.02300307,0.0006250953],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9186243,0.01606123,0.0003005138,0.06052813,0.00003264531,0.0002720396,0.00001188654,0.00002294889,0.004146255],"genre_scores_gemma":[0.9967833,0.002071106,0.00002129238,0.0006557941,0.0003799481,0.000006349891,0.000001693994,0.00001596371,0.00006457823],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2449031,"threshold_uncertainty_score":0.647936,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2158016302864774,"score_gpt":0.4433036777636275,"score_spread":0.2275020474771501,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}