{"id":"W3034887208","doi":"10.1128/mbio.00575-20","title":"Comparative Genomics Identified a Genetic Locus in Plant-Associated <i>Pseudomonas</i> spp. That Is Necessary for Induced Systemic Susceptibility","year":2020,"lang":"en","type":"article","venue":"mBio","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"China Postdoctoral Science Foundation; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Life Sciences Research Foundation","keywords":"Genomics; Computational biology; Biology; Locus (genetics); Genetics; Pseudomonas; Comparative genomics; Genome; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001677884,0.0001634948,0.0003443617,0.00001274112,0.0001667529,0.00009427543,0.0003013122,0.0001313007,0.0001352352],"category_scores_gemma":[0.0000398561,0.00007996498,0.0001135386,0.0002316016,0.00003163884,0.000119415,0.00008157218,0.000211345,0.00007126021],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001030823,"about_ca_system_score_gemma":0.00001873494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001764709,"about_ca_topic_score_gemma":0.00541941,"domain_scores_codex":[0.9988327,0.0001323184,0.0003255316,0.0003326861,0.00009915879,0.0002776278],"domain_scores_gemma":[0.9993837,0.000238462,0.0001646833,0.00006759613,0.00005934914,0.00008617782],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001208366,0.000121139,0.009858395,0.00001742895,0.00003144299,0.00000461686,0.0007914914,0.000005496258,0.9838207,0.000001511952,0.004682453,0.0005445012],"study_design_scores_gemma":[0.001864296,0.001017106,0.4403476,0.0002909111,0.00009102143,0.00005976657,0.009735112,0.002431639,0.5341932,0.0003004987,0.008639443,0.001029511],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971382,0.0001691792,0.000006994181,0.0008794095,0.0001605339,0.00052937,0.0009386808,0.00004599837,0.0001316156],"genre_scores_gemma":[0.9987161,0.00004155573,0.00002046101,0.000775434,0.00006743699,0.00002757365,0.0002854333,0.000001385439,0.00006463187],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4496275,"threshold_uncertainty_score":0.3260877,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06960959344273922,"score_gpt":0.2551670861571139,"score_spread":0.1855574927143747,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}