{"id":"W3034946649","doi":"10.1172/jci.insight.139287","title":"Reduced HIV-1 latent reservoir outgrowth and distinct immune correlates among women in Rakai, Uganda","year":2020,"lang":"en","type":"article","venue":"JCI Insight","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"NHLBI Division of Intramural Research; National Institute of Allergy and Infectious Diseases; Johns Hopkins University; Division of Intramural Research, National Institute of Allergy and Infectious Diseases; Gilead Sciences","keywords":"Provirus; Immunology; Immune system; Biology; Virology; Viral replication; Viral load; Persistence (discontinuity); Virus; Viral quasispecies; Human immunodeficiency virus (HIV); Medicine; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001651264,0.0001929739,0.0003590316,0.00009395079,0.000138264,0.00002947685,0.0001697462,0.0001757082,0.000645904],"category_scores_gemma":[0.0001871573,0.000148391,0.00005194741,0.0002116726,0.0002302402,0.000109449,0.0001991305,0.0004207312,0.001165387],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001077619,"about_ca_system_score_gemma":0.0000612921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000157699,"about_ca_topic_score_gemma":0.00004970686,"domain_scores_codex":[0.9984946,0.0001938698,0.0002968415,0.0003692786,0.00005075944,0.0005946331],"domain_scores_gemma":[0.9994481,0.0001251543,0.00006296433,0.0002059227,0.00003269473,0.0001252205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001487541,0.0005979442,0.8431637,0.00008624406,0.0005034693,0.0004998946,0.01866686,0.000009812351,0.1241496,0.0002121667,0.008085833,0.0025369],"study_design_scores_gemma":[0.005846114,0.000904957,0.9355438,0.00007034039,0.00002383049,0.00002323255,0.0005697911,0.00003655063,0.02610432,0.0001529694,0.03039475,0.0003293693],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9910011,0.003336148,0.000003653633,0.001656535,0.0001290444,0.000314792,0.00006107945,0.00006117362,0.003436416],"genre_scores_gemma":[0.9958268,0.0002111146,0.00001001727,0.00006859038,0.00002440255,0.00008338362,0.0002637292,0.00001865812,0.003493311],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09804531,"threshold_uncertainty_score":0.9996123,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0172238165961739,"score_gpt":0.2326096532820674,"score_spread":0.2153858366858935,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}