{"id":"W3035272613","doi":"10.1016/j.jprot.2020.103878","title":"Proteome of the fungus Phoma macdonaldii, the causal agent of black stem of sunflower","year":2020,"lang":"en","type":"article","venue":"Journal of Proteomics","topic":"Sunflower and Safflower Cultivation","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta","funders":"Liaoning Revitalization Talents Program; Department of Science and Technology of Liaoning Province; Department of Education of Liaoning Province","keywords":"Proteome; Biology; Phoma; Sunflower; Proteomics; Fungus; KEGG; Computational biology; Pathogen; Genetics; Gene; Botany; Transcriptome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000508435,0.0001153154,0.0003031742,0.00001077198,0.00005643115,0.0000133731,0.0005570638,0.00007603335,0.0001204513],"category_scores_gemma":[0.000142869,0.00003242672,0.0002982677,0.0003579838,0.0001565094,0.00009718045,0.00009656131,0.0002388636,0.000001593705],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002082228,"about_ca_system_score_gemma":0.00004596899,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002715808,"about_ca_topic_score_gemma":0.00001667761,"domain_scores_codex":[0.998414,0.0001358241,0.0007181073,0.0001030278,0.0004943166,0.0001347232],"domain_scores_gemma":[0.9984055,0.0001098099,0.000969799,0.00007941101,0.0003702328,0.00006521786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002900296,0.0001060838,0.01094876,0.00003950697,0.00006090954,0.000002174777,0.0009908815,0.0001580584,0.9848278,0.00008791513,0.000467053,0.002020882],"study_design_scores_gemma":[0.000518145,0.0009874003,0.2083081,0.0001357431,0.00006571599,0.00001950433,0.001222287,0.0002512989,0.7861158,0.0003204448,0.00193032,0.0001252806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946917,0.0001013903,0.00007805694,0.004275408,0.0001788384,0.0005159874,0.00003207626,0.000003433359,0.0001231263],"genre_scores_gemma":[0.9991576,0.00002596148,0.0003351406,0.0001678558,0.0002459173,0.000003594369,0.00000105415,0.000001622471,0.00006122266],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.198712,"threshold_uncertainty_score":0.1322323,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03370215871228353,"score_gpt":0.2095106436823337,"score_spread":0.1758084849700502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}