{"id":"W3035623041","doi":"10.3389/fmicb.2020.01322","title":"An Unusual Salmonella Enteritidis Strain Carrying a Modified Virulence Plasmid Lacking the prot6e Gene Represents a Geographically Widely Distributed Lineage","year":2020,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Government of Canada","keywords":"Biology; Virulence; Plasmid; Salmonella enteritidis; Genetics; Multilocus sequence typing; Salmonella enterica; Phage typing; Salmonella; Gene; Typing; Serotype; Microbiology; Escherichia coli; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007301897,0.0002905983,0.0002540815,0.0004757929,0.0002717431,0.0002826837,0.0001623163,0.0002081338,0.0003212622],"category_scores_gemma":[0.0002221053,0.0001107524,0.0001745571,0.0004794046,0.0001959998,0.0001272175,0.0003149843,0.0002528807,0.000142956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001389116,"about_ca_system_score_gemma":0.0002151918,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003037832,"about_ca_topic_score_gemma":0.00708797,"domain_scores_codex":[0.9998835,0.000007461245,0.00001182957,0.00003760205,0.00003048693,0.00002904614],"domain_scores_gemma":[0.9997855,0.00003051587,0.00008247241,0.00002868511,0.00002934767,0.00004356406],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002695281,0.00006643935,0.06745125,0.0000630918,0.00002551829,0.00151428,0.0003272404,0.0001317675,0.9244183,0.00007074051,0.00004807128,0.005613776],"study_design_scores_gemma":[0.00001705074,0.0008018799,0.8479744,0.00002390868,0.00009682775,0.020279,0.001341397,0.00094515,0.1247343,0.00007464102,0.003678356,0.00003310798],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989002,0.0000529304,0.0005566621,0.00001136927,0.000002505796,0.000008909086,0.0001493544,0.000009105698,0.0003090046],"genre_scores_gemma":[0.997552,0.00009125355,0.001385025,0.00001585489,0.00000380374,0.000004858618,0.000580907,0.000006229575,0.0003600322],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003037832,"threshold_uncertainty_score":0.006040335,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02574564909165515,"score_gpt":0.2349146246176778,"score_spread":0.2091689755260227,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}