{"id":"W3035648704","doi":"10.1038/s41467-020-16778-5","title":"Geometry and evolution of the ecological niche in plant-associated microbes","year":2020,"lang":"en","type":"article","venue":"Nature Communications","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Research Councils UK; Canadian Institute for Advanced Research","keywords":"Niche; Ecological niche; Abiotic component; Generalist and specialist species; Ecology; Biology; Host (biology); Environmental niche modelling; Adaptability; Biotic component; Phylogenetic tree; Range (aeronautics); Habitat","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002807022,0.0001409055,0.0002741863,0.001296468,0.0003746774,0.00112759,0.0003254148,0.0003842569,0.0007204384],"category_scores_gemma":[0.001449663,0.0002655036,0.0002882193,0.0007642957,0.00108214,0.0007418724,0.00102996,0.0004001576,0.000197312],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006091192,"about_ca_system_score_gemma":0.0001791063,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001413766,"about_ca_topic_score_gemma":0.002330105,"domain_scores_codex":[0.9997117,0.00008697672,0.00001455805,0.00008239211,0.00005624992,0.00004810558],"domain_scores_gemma":[0.9989895,0.0003270229,0.0003669438,0.00008013871,0.00008036955,0.0001559915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005543454,0.00007069792,0.4646913,0.0002243573,0.0001908625,0.0006440266,0.002266488,0.02961143,0.4362429,0.02214633,0.0005984919,0.04275869],"study_design_scores_gemma":[0.00001134508,0.00007873782,0.9534533,0.00002143833,0.00002311828,0.00113726,0.0005700865,0.02540346,0.006310339,0.01091783,0.002006635,0.00006640401],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962799,0.0002605792,0.002296865,0.00004610668,0.000001651492,0.000002071534,0.0000819737,0.00001567884,0.001015123],"genre_scores_gemma":[0.9980824,0.000111424,0.001570855,0.00001041205,0.00000383121,0.0000034235,0.00008294808,0.00001393316,0.0001207771],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001413766,"threshold_uncertainty_score":0.004419446,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01243503756963778,"score_gpt":0.240392995089749,"score_spread":0.2279579575201112,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}