{"id":"W3035719236","doi":"10.1038/s41467-020-16669-9","title":"Structure and mechanism of DNA delivery of a gene transfer agent","year":2020,"lang":"en","type":"article","venue":"Nature Communications","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":112,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"European Regional Development Fund; Natural Sciences and Engineering Research Council of Canada; Masarykova Univerzita; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Central European Institute of Technology; Grantová Agentura České Republiky; Ministerstvo Školství, Mládeže a Tělovýchovy; Nvidia; European Molecular Biology Organization","keywords":"Siphoviridae; DNA; Horizontal gene transfer; Biophysics; Biology; Gammaproteobacteria; Gene; Antiparallel (mathematics); Genetics; Chemistry; Bacteriophage; Genome; Escherichia coli; Physics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002228928,0.00005392769,0.00008893442,0.00001162572,0.00005240357,0.00000444753,0.0003189895,0.00008794096,0.0004141083],"category_scores_gemma":[0.000009951284,0.0000496295,0.00003656931,0.0001106444,0.0001082944,0.00006948516,0.000160013,0.0002450632,0.000004362243],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001290677,"about_ca_system_score_gemma":0.000005349451,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006771395,"about_ca_topic_score_gemma":0.0002504098,"domain_scores_codex":[0.9996498,0.00003129309,0.0001273998,0.00008543849,0.00005367248,0.00005245952],"domain_scores_gemma":[0.9995313,0.00002892762,0.00003389089,0.0003508485,0.00001369874,0.00004135651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00000560691,0.00002603726,0.0001358028,0.000005119157,0.00001245559,1.337819e-7,0.0009721062,0.000005397269,0.9967068,0.001064105,0.0002278255,0.0008385558],"study_design_scores_gemma":[0.0003380207,0.00009588995,0.04838557,0.00001964459,0.00008270558,0.00001259152,0.0002884744,0.0005278483,0.9286563,0.0002719742,0.02116442,0.0001565703],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948855,0.0006104332,0.0003463452,0.003085679,0.0000380406,0.0001256877,0.0001809088,0.00001065057,0.0007167315],"genre_scores_gemma":[0.9935812,0.0003317028,0.005592465,0.0004451876,0.00000593838,0.000002082812,0.00002250171,0.000005200727,0.00001372215],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06805057,"threshold_uncertainty_score":0.4534196,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01521898200334598,"score_gpt":0.2416141855019457,"score_spread":0.2263952034985997,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}