{"id":"W3036084396","doi":"10.1016/j.csbj.2020.06.019","title":"Computational approaches in viral ecology","year":2020,"lang":"en","type":"review","venue":"Computational and Structural Biotechnology Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Metagenomics; Biology; Computational biology; In silico; Microbial ecology; Genomics; Genome; Function (biology); Ecology; Evolutionary biology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001473393,0.001464077,0.001938377,0.001787257,0.0005687581,0.002421614,0.002237198,0.002313067,0.003429496],"category_scores_gemma":[0.003993788,0.000683109,0.001665866,0.002322366,0.001350048,0.002228303,0.002130547,0.002622406,0.001515558],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001008494,"about_ca_system_score_gemma":0.001841641,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002877232,"about_ca_topic_score_gemma":0.001956186,"domain_scores_codex":[0.9992589,0.0003125387,0.00005617593,0.0001197648,0.0002000313,0.00005251932],"domain_scores_gemma":[0.9978945,0.001619221,0.0000789757,0.00009721267,0.0002348249,0.00007536366],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006059132,0.0001199697,0.001714955,0.007597356,0.0008293647,0.0003486198,0.000214904,0.1948955,0.001604188,0.365113,0.04194704,0.3855546],"study_design_scores_gemma":[0.00005473105,0.00007362059,0.0009466471,0.002311103,0.0001575944,0.0003728258,0.0001426463,0.1935678,0.001162335,0.4376218,0.363481,0.0001079594],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004112758,0.6600107,0.2994269,0.007821363,0.002211954,0.0001236896,0.0009117437,0.0007859646,0.02459488],"genre_scores_gemma":[0.0585352,0.7529403,0.1742762,0.00188249,0.003015401,0.0005551428,0.001571959,0.0004668738,0.006756412],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003429496,"threshold_uncertainty_score":0.01147282,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03116580091801105,"score_gpt":0.2776881358436727,"score_spread":0.2465223349256616,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}