{"id":"W3036393440","doi":"10.1111/cla.12417","title":"A bi‐organellar phylogenomic study of Pandanales: inference of higher‐order relationships and unusual rate‐variation patterns","year":2020,"lang":"en","type":"article","venue":"Cladistics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Evolutionary biology; Clade; Molecular clock; Phylogenomics; Plastid; Phylogenetics; Genome; Mitochondrial DNA; Genetics; Gene; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004316615,0.0003014599,0.0003654372,0.00135745,0.0007278652,0.00063877,0.0002410868,0.0002923063,0.0008264781],"category_scores_gemma":[0.0009972963,0.0002082767,0.0003398593,0.00135757,0.0003471303,0.0005311149,0.0006625493,0.0003795068,0.0002029396],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000271973,"about_ca_system_score_gemma":0.0002629125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002542939,"about_ca_topic_score_gemma":0.00444713,"domain_scores_codex":[0.9997284,0.00005811637,0.00001564427,0.0001407861,0.00002513291,0.00003193054],"domain_scores_gemma":[0.9994518,0.0001737119,0.0001466745,0.0001025036,0.00006566213,0.00005963071],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005055497,0.00007990884,0.5184587,0.0002141235,0.0004245811,0.0003414818,0.00273775,0.004823145,0.4155875,0.001798048,0.0001241866,0.05490509],"study_design_scores_gemma":[0.000009587445,0.00008149328,0.9752587,0.0000198193,0.0001098572,0.0004960302,0.0007513433,0.01331065,0.006251541,0.0008411781,0.002840424,0.00002920097],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974167,0.00007250473,0.001990508,0.0000155377,9.621286e-7,0.000003773437,0.00018108,0.00002966849,0.0002891159],"genre_scores_gemma":[0.9966011,0.00004862996,0.002740527,0.0000101844,0.000001747307,0.000007286154,0.0004479194,0.00001798151,0.0001245144],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002542939,"threshold_uncertainty_score":0.005056202,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03712186061970303,"score_gpt":0.2593039964277573,"score_spread":0.2221821358080542,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}