{"id":"W3036558735","doi":"10.1158/1557-3265.liqbiop20-pr13","title":"Abstract PR13: Comprehensive detection of ctDNA in localized head and neck cancer by genome- and methylome-based analysis","year":2020,"lang":"en","type":"article","venue":"Clinical Cancer Research","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre","funders":"","keywords":"DNA methylation; Head and neck squamous-cell carcinoma; Differentially methylated regions; CpG site; Methylation; Biology; Cancer research; Oncology; Deep sequencing; Methylated DNA immunoprecipitation; Cancer; Bisulfite sequencing; Head and neck cancer; Internal medicine; Medicine; Gene; Genome; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005125287,0.0004538517,0.00038011,0.0008021918,0.0002217874,0.0003746368,0.0004038862,0.0003959462,0.00181949],"category_scores_gemma":[0.0006484396,0.0002296389,0.0003622318,0.0004884134,0.0002290055,0.0001934628,0.0005351347,0.0004293077,0.0006307299],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003032861,"about_ca_system_score_gemma":0.0003562684,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002022555,"about_ca_topic_score_gemma":0.003411333,"domain_scores_codex":[0.9995589,0.0000508671,0.00002451541,0.0002021518,0.0001284896,0.00003506365],"domain_scores_gemma":[0.9997351,0.00005268117,0.00005682904,0.00003777149,0.00008258205,0.00003505914],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005840595,0.00004790427,0.07327606,0.0002423949,0.0001726928,0.0001908085,0.0000680833,0.001614491,0.8901595,0.0001260141,0.001683996,0.03183401],"study_design_scores_gemma":[0.00007561086,0.0006867961,0.2937078,0.00004482171,0.0002327482,0.002625982,0.00009816503,0.02392735,0.6697417,0.0004271637,0.008375695,0.00005618959],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9338906,0.002782261,0.04110406,0.0002256747,0.00005161822,0.0002216517,0.01815128,0.001582528,0.001990384],"genre_scores_gemma":[0.9477923,0.000584276,0.03760035,0.0002791444,0.00002986231,0.0002063156,0.01124622,0.0001214416,0.002140193],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002022555,"threshold_uncertainty_score":0.006086826,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1198152654695216,"score_gpt":0.4595226261646075,"score_spread":0.3397073606950859,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}