{"id":"W3036756961","doi":"10.1128/mra.00228-20","title":"Closed Genome Sequences and Antimicrobial Resistance Profiles of Eight Wild Bird <i>Salmonella</i> Isolates Obtained with MinION and Illumina MiSeq Sequencing","year":2020,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Public Health Agency; Public Health Agency of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Canadian Food Inspection Agency","keywords":"Minion; Salmonella enterica; Biology; Plasmid; Genetics; Nanopore sequencing; Genome; Illumina dye sequencing; Salmonella; Whole genome sequencing; DNA sequencing; Gene; Microbiology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000376076,0.0005880472,0.0005873719,0.001789374,0.001110146,0.0007651508,0.0005519437,0.000420736,0.004405399],"category_scores_gemma":[0.0006925387,0.0003395554,0.0006313827,0.002906967,0.0004951924,0.0002617615,0.0003909216,0.0006370914,0.001600342],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002031462,"about_ca_system_score_gemma":0.003748454,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1568987,"about_ca_topic_score_gemma":0.3242841,"domain_scores_codex":[0.9995121,0.00002325273,0.00003185335,0.0001750839,0.0001431254,0.0001146978],"domain_scores_gemma":[0.9992204,0.00009240025,0.0001412867,0.00005969769,0.0003391254,0.0001471716],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001287773,0.00007234595,0.0185989,0.0005133446,0.00009347692,0.0002926925,0.0009850991,0.000635697,0.9508464,0.0004813175,0.003151528,0.02304125],"study_design_scores_gemma":[0.00008892609,0.0008078807,0.7345103,0.0001790056,0.000462702,0.001047261,0.001595749,0.002221328,0.1581029,0.0002989036,0.1005259,0.0001591717],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7436581,0.001114456,0.01473957,0.0002172281,0.00007273406,0.0004574938,0.2310787,0.0005242109,0.008137498],"genre_scores_gemma":[0.407383,0.00108304,0.05127478,0.0003357277,0.00002766842,0.0004262916,0.5261492,0.0004522349,0.01286806],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1568987,"threshold_uncertainty_score":0.3119709,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01792082163040632,"score_gpt":0.1958004466477194,"score_spread":0.1778796250173131,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}