{"id":"W3036770051","doi":"10.1128/aac.02514-19","title":"Genomic Analysis Reveals Antibiotic-Susceptible Clones and Emerging Resistance in Neisseria gonorrhoeae in Saskatchewan, Canada","year":2020,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Saskatchewan","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Neisseria gonorrhoeae; Biology; Tetracycline; Microbiology; Antibiotic resistance; Clade; Genotype; Genetics; Antibiotics; Virology; Multilocus sequence typing; Neisseria; Gene; Bacteria; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002420216,0.000244349,0.0002385064,0.002411718,0.001776693,0.0009436323,0.0005464712,0.0002822579,0.001815125],"category_scores_gemma":[0.0008102565,0.00028928,0.0002473152,0.004212184,0.0006784006,0.0001313825,0.0006006855,0.0004254565,0.0003093639],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01032672,"about_ca_system_score_gemma":0.01798289,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9800255,"about_ca_topic_score_gemma":0.9934069,"domain_scores_codex":[0.9996545,0.00002611841,0.00001922999,0.00008756547,0.00008948136,0.0001230704],"domain_scores_gemma":[0.9991597,0.0001022483,0.00008315885,0.0000293474,0.0004460133,0.0001795425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000351944,0.00008382458,0.9052362,0.0001085672,0.0001285776,0.00135021,0.003821112,0.0008013475,0.05569549,0.0004939488,0.001379928,0.03054883],"study_design_scores_gemma":[0.000006087186,0.00001951909,0.9944996,0.00001840228,0.00001574016,0.0001221877,0.002702515,0.0002317139,0.0007406667,0.00004008136,0.001592186,0.00001121597],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924133,0.0004111426,0.0002795736,0.0002168605,0.000005562923,0.00005047998,0.003356866,0.00001404578,0.003252122],"genre_scores_gemma":[0.9924252,0.0008591544,0.0007192524,0.0002033898,0.00000269405,0.00002952418,0.002597169,0.00001165688,0.003152085],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01997447,"threshold_uncertainty_score":0.0749259,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01189795059976153,"score_gpt":0.252238057292358,"score_spread":0.2403401066925965,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}