{"id":"W3036782024","doi":"10.1111/zph.12741","title":"Detection of spatial, temporal and space‐time <i>Salmonella</i> Heidelberg and <i>Salmonella</i> Typhimurium clusters in Ontario in 2015, and comparisons to known outbreaks","year":2020,"lang":"en","type":"article","venue":"Zoonoses and Public Health","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Guelph Wellington Seniors Association; University of Guelph; Guelph General Hospital; Public Health Ontario","funders":"","keywords":"Outbreak; Salmonella; Scan statistic; Subtyping; Serotype; Cluster (spacecraft); Pulsed-field gel electrophoresis; Geography; Biology; Veterinary medicine; Cartography; Statistics; Virology; Medicine; Computer science; Mathematics; Genetics; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006205144,0.0002175942,0.0006210309,0.00005089806,0.0001048094,0.00006103857,0.00008898361,0.0001534649,0.0000268545],"category_scores_gemma":[0.00007976687,0.0001193181,0.00002913721,0.0002702532,0.0001247151,0.0001357232,0.0001720669,0.0002526547,0.000002959346],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004680362,"about_ca_system_score_gemma":0.00006113088,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.28468,"about_ca_topic_score_gemma":0.5175367,"domain_scores_codex":[0.9980898,0.0002703652,0.0005337493,0.0005307649,0.0001019017,0.0004733938],"domain_scores_gemma":[0.998872,0.0002784233,0.000168999,0.00005997664,0.0000321291,0.0005885066],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001375063,0.00007687316,0.9578333,0.00004788732,0.000009321503,0.000003557116,0.00130388,0.000005294677,0.003649707,0.00002612896,0.0007929183,0.03611365],"study_design_scores_gemma":[0.0005266581,0.001067828,0.9554115,0.00003592946,0.000005152007,0.00002183659,0.001043875,0.0007044955,0.00005955958,0.00006222559,0.04082484,0.000236123],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.963351,0.001666257,0.00002677352,0.0343181,0.00005634162,0.0003733867,0.00002320054,0.00002324068,0.0001616788],"genre_scores_gemma":[0.9961729,0.0006926208,0.0001063009,0.002875684,0.00006964385,0.000009876328,0.00002838759,0.00000283323,0.00004174635],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2328567,"threshold_uncertainty_score":0.7200834,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04259169235069292,"score_gpt":0.2482221532307273,"score_spread":0.2056304608800343,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}