{"id":"W3036782024","doi":"10.1111/zph.12741","title":"Detection of spatial, temporal and space‐time <i>Salmonella</i> Heidelberg and <i>Salmonella</i> Typhimurium clusters in Ontario in 2015, and comparisons to known outbreaks","year":2020,"lang":"en","type":"article","venue":"Zoonoses and Public Health","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Guelph Wellington Seniors Association; University of Guelph; Guelph General Hospital; Public Health Ontario","funders":"","keywords":"Outbreak; Salmonella; Scan statistic; Subtyping; Serotype; Cluster (spacecraft); Pulsed-field gel electrophoresis; Geography; Biology; Veterinary medicine; Cartography; Statistics; Virology; Medicine; Computer science; Mathematics; Genetics; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004325455,0.0002494565,0.0002017961,0.001122167,0.0008198172,0.0006230877,0.0004789864,0.0001885744,0.0007075389],"category_scores_gemma":[0.001904592,0.000220456,0.0003695711,0.001657056,0.0005729765,0.0002421497,0.0008294323,0.0001622997,0.00009616328],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.009417935,"about_ca_system_score_gemma":0.01004034,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9429493,"about_ca_topic_score_gemma":0.9693273,"domain_scores_codex":[0.9993566,0.00003985604,0.00004230379,0.0001367517,0.0002693038,0.000155219],"domain_scores_gemma":[0.9987481,0.00008675798,0.0005112075,0.0000591426,0.0004444475,0.000150347],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001254613,0.000008203768,0.9922308,0.00006899117,0.00003675545,0.0001600628,0.001600771,0.0002783101,0.001678125,0.00006275372,0.000390006,0.003359765],"study_design_scores_gemma":[0.000001905579,0.00002015859,0.9981593,0.00001125183,0.00001364816,0.00004453881,0.0008361035,0.0002187013,0.0001249987,0.000008427683,0.0005575353,0.000003319502],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956802,0.0001575906,0.0002827774,0.0000559079,0.000003383348,0.00003628821,0.002739066,0.0000118287,0.00103289],"genre_scores_gemma":[0.9967836,0.0001448133,0.0003942009,0.00001742509,0.000002414079,0.00001631465,0.002116726,0.00000401701,0.000520575],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0570507,"threshold_uncertainty_score":0.1147733,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04259169235069292,"score_gpt":0.2482221532307273,"score_spread":0.2056304608800343,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}