{"id":"W3036803262","doi":"10.3389/fmicb.2020.01317","title":"Source Tracking Based on Core Genome SNV and CRISPR Typing of Salmonella enterica Serovar Heidelberg Isolates Involved in Foodborne Outbreaks in Québec, 2012","year":2020,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Public Health Agency of Canada; McGill University; Université Laval; Institut National de Santé Publique du Québec","funders":"Genome Canada","keywords":"Salmonella enterica; CRISPR; Serotype; Biology; Outbreak; Salmonella; Genome; Microbiology; Typing; Virology; Computational biology; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004637139,0.0004318052,0.0002445227,0.001165139,0.000744738,0.000516575,0.0004006074,0.0002803823,0.0009438072],"category_scores_gemma":[0.0008403378,0.0001669223,0.0002549175,0.00126771,0.0003449488,0.0001756854,0.0002822571,0.000268669,0.0001102505],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005533798,"about_ca_system_score_gemma":0.00409267,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9214044,"about_ca_topic_score_gemma":0.9628224,"domain_scores_codex":[0.9996418,0.00002601203,0.0000216378,0.0001087606,0.0001263973,0.00007529818],"domain_scores_gemma":[0.9992022,0.00006325057,0.000132474,0.00003013068,0.0004787007,0.00009329072],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005951089,0.0000972331,0.8920699,0.0001310306,0.0001565915,0.0005850822,0.0008837784,0.001570536,0.0738342,0.0001396693,0.001610937,0.0283259],"study_design_scores_gemma":[0.000007377979,0.00007767128,0.9911854,0.00001559302,0.00004119382,0.0001891065,0.0003853774,0.002406397,0.004573518,0.0000135436,0.001089174,0.00001551783],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923137,0.0002699387,0.001396863,0.00009642206,0.000009897234,0.00008185528,0.003568648,0.0000355643,0.002227081],"genre_scores_gemma":[0.9924123,0.0001962015,0.002451758,0.00006253879,0.000003923977,0.00001621326,0.003439718,0.000009855172,0.001407574],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07859558,"threshold_uncertainty_score":0.1581168,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.027163521699226,"score_gpt":0.2180440825570641,"score_spread":0.1908805608578381,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}