{"id":"W3036831525","doi":"10.1101/gr.257006.119","title":"System-wide analyses of the fission yeast poly(A) <sup>+</sup> RNA interactome reveal insights into organization and function of RNA–protein complexes","year":2020,"lang":"en","type":"article","venue":"Genome Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Medical Research Council; Deutsche Forschungsgemeinschaft; Medical Research Council Canada; Wellcome Trust","keywords":"RNA; Biology; Interactome; Exosome complex; RNA-binding protein; Signal recognition particle RNA; Riboswitch; Computational biology; Non-coding RNA; Cell biology; Small nuclear RNA; Intron; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003625114,0.0000976598,0.0001799433,0.0001239876,0.0001704952,0.00003073954,0.0002870374,0.00008935665,0.00002302518],"category_scores_gemma":[0.0006045524,0.00006893507,0.00005005367,0.0006335585,0.000168144,0.00001055396,0.000460885,0.0001979943,0.000005891651],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003484291,"about_ca_system_score_gemma":0.0001368416,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001943904,"about_ca_topic_score_gemma":0.000009361111,"domain_scores_codex":[0.9984059,0.0003700892,0.0002656165,0.0002766119,0.0004592145,0.0002225776],"domain_scores_gemma":[0.99897,0.00003596098,0.00008664286,0.000295314,0.0004726257,0.0001394835],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001707984,0.00002102793,0.001324206,0.0003230025,0.00005317919,0.000001451516,0.0002942108,0.00008282129,0.9966071,0.00006981217,0.0001348316,0.0009175923],"study_design_scores_gemma":[0.0003238923,0.000477882,0.009143846,0.00009630726,0.000009852879,0.000002119358,0.0009345787,0.0008746682,0.9869649,0.00002435878,0.001069028,0.00007861507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963897,0.00148421,0.001242999,0.0003643614,0.00001106877,0.0003103752,0.00001121943,0.000005951573,0.0001800731],"genre_scores_gemma":[0.9992352,0.0001084305,0.0001150432,0.00002559693,0.0001131279,0.000007072435,0.00005504895,0.00001782485,0.000322658],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009642215,"threshold_uncertainty_score":0.281109,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04282932132541784,"score_gpt":0.3247320469438685,"score_spread":0.2819027256184507,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}