{"id":"W3036962498","doi":"10.1101/2020.06.17.158428","title":"The genome assembly and annotation of <i>Magnolia biondii</i> Pamp., a phylogenetically, economically, and medicinally important ornamental tree species","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Government of Jiangxi Province","keywords":"Biology; Magnoliaceae; Genome; Comparative genomics; Phylogenomics; Phylogenetic tree; Genetics; Whole genome sequencing; Reference genome; Genome project; Gene; Evolutionary biology; Clade; Genomics; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002517068,0.0007765893,0.0005760391,0.0008940371,0.0005557603,0.000494835,0.0004176817,0.0003400283,0.001798654],"category_scores_gemma":[0.0004069785,0.0003600566,0.0008557747,0.001031325,0.0001640596,0.0002865261,0.0004926771,0.0006433881,0.001308854],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005808597,"about_ca_system_score_gemma":0.0007250679,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005212111,"about_ca_topic_score_gemma":0.006365196,"domain_scores_codex":[0.9998084,0.00001893652,0.0000156189,0.00009203359,0.00003605476,0.0000289864],"domain_scores_gemma":[0.9998032,0.00003156749,0.00004232754,0.00002740613,0.00005532495,0.00004022152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004466873,0.0000414606,0.004471824,0.0005651867,0.00004144498,0.0002725529,0.0002951998,0.0006838981,0.9652742,0.0002975006,0.002146994,0.02546312],"study_design_scores_gemma":[0.0001867473,0.0005381068,0.3973289,0.0004543016,0.0005972417,0.002408283,0.0005399654,0.02196165,0.4041564,0.0007893697,0.170887,0.0001521131],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8588896,0.003559061,0.03669481,0.0004987064,0.0002115407,0.0004682868,0.09162737,0.001720871,0.00632972],"genre_scores_gemma":[0.4834009,0.001768734,0.1195755,0.0002721911,0.00008062587,0.0006649094,0.3818322,0.0007049022,0.0117001],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005212111,"threshold_uncertainty_score":0.01036352,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008974217247296487,"score_gpt":0.1947194082131372,"score_spread":0.1857451909658407,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}