{"id":"W3036967235","doi":"10.1101/2020.06.18.160689","title":"Cryptosporulation in <i>Kurthia</i> spp. forces a rethinking of asporogenesis in Firmicutes","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Fondation Pierre Mercier pour la Science; Fondation Pierre Mercier; Bundesministerium für Bildung und Forschung; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; McGill University; German Network for Bioinformatics Infrastructure; National Science Foundation","keywords":"Firmicutes; Endospore; Biology; Bacilli; Spore; Microbiology; Lineage (genetic); Genetics; Genome; Bacteria; Gene; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002014387,0.0005490282,0.000316551,0.000765242,0.0004081167,0.0006265327,0.0002659474,0.0003431267,0.0007179131],"category_scores_gemma":[0.0003246088,0.0002223428,0.0003455802,0.0006388979,0.00037088,0.0004027863,0.0008692403,0.0005199884,0.0002796015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002939151,"about_ca_system_score_gemma":0.0003613354,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002413437,"about_ca_topic_score_gemma":0.002453665,"domain_scores_codex":[0.9997821,0.00002363727,0.00002153044,0.00006165801,0.00004769427,0.00006335685],"domain_scores_gemma":[0.9996775,0.00003775188,0.0001113942,0.00004092866,0.00006371958,0.00006857047],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000102939,0.00002555984,0.01739454,0.00008554542,0.00001518721,0.0002144866,0.0001695732,0.0000790849,0.9778787,0.00009285798,0.00003186731,0.003909664],"study_design_scores_gemma":[0.00002180464,0.0007180902,0.7861594,0.00007456122,0.0001276447,0.001913208,0.001935638,0.001277227,0.2013768,0.0003671222,0.005972038,0.00005646035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983672,0.0002476623,0.0004531601,0.00007093336,0.000004300355,0.00001228377,0.0002434551,0.000021815,0.00057929],"genre_scores_gemma":[0.9971294,0.0002758108,0.001309676,0.00005806632,0.000007794612,0.00001254226,0.0007537706,0.0000165515,0.0004363606],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002413437,"threshold_uncertainty_score":0.00479883,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01491239242906484,"score_gpt":0.2170655642510695,"score_spread":0.2021531718220047,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}