{"id":"W3037244322","doi":"10.1371/journal.pone.0235020","title":"Multiple Salmonella-pathogenicity island 2 effectors are required to facilitate bacterial establishment of its intracellular niche and virulence","year":2020,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Virulence; Pathogenicity island; Salmonella; Pathogenicity; Niche; Effector; Microbiology; Biology; Intracellular; Bacteria; Genetics; Cell biology; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001827475,0.0006980431,0.0005018534,0.0002539253,0.0001395486,0.0004548316,0.0003171367,0.000385686,0.0005621387],"category_scores_gemma":[0.0002001115,0.0003222493,0.0003763899,0.0001835889,0.0003014912,0.0002537276,0.0004623534,0.0005839777,0.0003887374],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002803216,"about_ca_system_score_gemma":0.0004365882,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006601067,"about_ca_topic_score_gemma":0.001057905,"domain_scores_codex":[0.9997198,0.00004531973,0.00004650778,0.00004179707,0.00008435264,0.00006220888],"domain_scores_gemma":[0.9997239,0.00005011714,0.00008254586,0.00003669303,0.00002472758,0.00008210714],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008446664,0.00001701634,0.0004170884,0.00001628934,0.000002719763,0.00006711264,0.000006462952,0.00006228833,0.9989176,0.00003232172,0.000006664948,0.0003699802],"study_design_scores_gemma":[0.00001671528,0.0002477153,0.0158909,0.000009770562,0.00002608501,0.0006048955,0.0000804956,0.001768013,0.9801002,0.00004167853,0.001202553,0.00001099262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963807,0.0003809008,0.002451416,0.00004498635,0.0000107163,0.00001762674,0.0002011832,0.00006717986,0.0004452608],"genre_scores_gemma":[0.9951403,0.0001963967,0.003313951,0.00003383721,0.000004227379,0.00002815989,0.000525762,0.00002589124,0.0007315048],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006980431,"threshold_uncertainty_score":0.002033889,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09345639677223999,"score_gpt":0.2137181382912476,"score_spread":0.1202617415190076,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}