{"id":"W3037292914","doi":"10.1186/s12864-020-06831-4","title":"Alternative splicing is highly variable among Daphnia pulex lineages in response to acute copper exposure","year":2020,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Environmental Toxicology and Ecotoxicology","field":"Environmental Science","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Daphnia pulex; Alternative splicing; RNA splicing; Gene; Genetics; DNA microarray; Transcriptome; Proteome; Gene expression; Genome; Proteomics; Gene expression profiling; Computational biology; RNA; Gene isoform; Daphnia","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001220215,0.0001735817,0.0002540064,0.0003961169,0.0002812597,0.0004884204,0.0001568809,0.0002543205,0.0004359257],"category_scores_gemma":[0.0001893065,0.0001575916,0.0002004759,0.0003444801,0.0003170665,0.0001887879,0.0003391244,0.0002724698,0.0001224718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002524015,"about_ca_system_score_gemma":0.0001063819,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009581891,"about_ca_topic_score_gemma":0.001792333,"domain_scores_codex":[0.9998178,0.00001198023,0.00001947165,0.00007880086,0.00003843056,0.00003370344],"domain_scores_gemma":[0.9997504,0.00004939918,0.0000948679,0.0000225362,0.00004982495,0.00003298499],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009396682,0.00000814392,0.02381115,0.00003526788,0.00001623243,0.0001005877,0.0001882044,0.00003499112,0.9742319,0.00002350237,0.00002161233,0.001434501],"study_design_scores_gemma":[0.000006603561,0.0001708245,0.8911757,0.0000128448,0.00005904033,0.0004924673,0.0005365296,0.0003800901,0.1055564,0.00008242514,0.001515919,0.00001116889],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988913,0.0001938428,0.0003230964,0.0000142326,0.000002614135,0.000004877386,0.0002937565,0.000008426034,0.0002679516],"genre_scores_gemma":[0.9974837,0.0002010145,0.0007639556,0.0000563826,0.000004138371,0.00002460504,0.0007299033,0.000008959083,0.0007272467],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009581891,"threshold_uncertainty_score":0.001905262,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01722916649353409,"score_gpt":0.2348618593377009,"score_spread":0.2176326928441668,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}