{"id":"W3037584721","doi":"10.1101/2020.06.25.162958","title":"Human papillomavirus type 16 sub-lineages and integration in cancer","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"NOSM University; Lakehead University; Thunder Bay Regional Research Institute","funders":"","keywords":"Biology; Genome; Population; Genome instability; Lineage (genetic); Cancer; Genetics; Computational biology; Virology; Gene; DNA; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005075395,0.0001908195,0.0003203502,0.002385636,0.0003773881,0.001011228,0.0001840652,0.0002700517,0.002322168],"category_scores_gemma":[0.001199694,0.0001418281,0.0003125038,0.002760347,0.0002320569,0.0002709487,0.0006603852,0.0002970219,0.000434104],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003006029,"about_ca_system_score_gemma":0.0003006066,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002595486,"about_ca_topic_score_gemma":0.003216695,"domain_scores_codex":[0.9996107,0.00004379913,0.00004070585,0.0001211822,0.0001176631,0.00006599207],"domain_scores_gemma":[0.9994472,0.0001334505,0.0001813296,0.00005991054,0.0001059981,0.0000720501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004166144,0.00002064267,0.9566364,0.0002063386,0.0001223014,0.0003182137,0.0002654651,0.0002270561,0.01789258,0.0001194023,0.0004900928,0.02328485],"study_design_scores_gemma":[0.000007233288,0.00006882495,0.9813423,0.00006739669,0.0001292881,0.002022393,0.0003625418,0.001269253,0.0074556,0.0004178734,0.0068458,0.00001144285],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9853795,0.005436977,0.001864911,0.0000640861,0.00001701715,0.00004840408,0.005296746,0.0001946249,0.001697755],"genre_scores_gemma":[0.992683,0.001178861,0.00188412,0.00002688724,0.000006880563,0.00002629547,0.003649094,0.00003653844,0.0005083629],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002595486,"threshold_uncertainty_score":0.007768452,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05157679008480793,"score_gpt":0.3264621966382112,"score_spread":0.2748854065534033,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}