{"id":"W3037983812","doi":"10.1099/jmm.0.001223","title":"Matrix-assisted laser desorption/ionization time-of-flight MS for the accurate identification of Burkholderia cepacia complex and Burkholderia gladioli in the clinical microbiology laboratory","year":2020,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Providence Health Care; BC Children's Hospital; University of British Columbia","funders":"Cystic Fibrosis Canada; BC Children's Hospital","keywords":"Burkholderia; Clinical microbiology; Microbiology; Identification (biology); Burkholderia cepacia complex; Biology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002829157,0.0001204088,0.0003678225,0.00004779106,0.00006389109,0.00002208574,0.0004884231,0.0003565242,0.00009857486],"category_scores_gemma":[0.002743337,0.00007655522,0.0001289923,0.0001906988,0.0004592249,0.00001002277,0.00008140856,0.0002174718,0.00000290045],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009928819,"about_ca_system_score_gemma":0.0001916934,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006637584,"about_ca_topic_score_gemma":0.00001764746,"domain_scores_codex":[0.9974344,0.0007618445,0.001358793,0.0002251838,0.00007111951,0.0001486356],"domain_scores_gemma":[0.9978865,0.0004263709,0.0009756188,0.0002113139,0.0004252176,0.00007491771],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002503267,0.00009961578,0.001372331,0.00004578247,0.00006867783,9.898403e-7,0.0001888379,0.000007987653,0.9929665,0.000041038,0.004407746,0.0005501835],"study_design_scores_gemma":[0.01064064,0.002790023,0.158262,0.0002143879,0.0004875586,0.0009546452,0.001638075,0.002497911,0.6984481,0.0001753067,0.1232342,0.0006570395],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882357,0.0005666603,0.003760783,0.006671746,0.0003368342,0.0003038314,0.0001184872,0.000003249103,0.000002708229],"genre_scores_gemma":[0.997718,0.0003390818,0.0004616023,0.0008551997,0.000371257,0.000005727574,0.0002265407,0.00001030256,0.00001226585],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2945184,"threshold_uncertainty_score":0.3284229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04849381813870748,"score_gpt":0.3394780189713507,"score_spread":0.2909842008326432,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}