{"id":"W3038263275","doi":"10.1186/s12915-020-00808-1","title":"Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion","year":2020,"lang":"en","type":"article","venue":"BMC Biology","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Natural Sciences and Engineering Research Council of Canada; Science for Life Laboratory; Energimyndigheten; European Research Council; Vetenskapsrådet; Svenska Forskningsrådet Formas; Knut och Alice Wallenbergs Stiftelse; Canada Research Chairs; University College London","keywords":"Biology; Willow; Salix viminalis; Genome; Genetics; Chromosome; Botany; Evolutionary biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001435931,0.0001484556,0.000294696,0.00001656081,0.00004736532,0.000005245652,0.0003722261,0.0002008923,0.0001074357],"category_scores_gemma":[0.0001636144,0.0001038079,0.0001700379,0.00008725852,0.0003208332,0.000003304771,0.0002372502,0.00008035116,0.000006263583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004195245,"about_ca_system_score_gemma":0.0000828847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001324005,"about_ca_topic_score_gemma":0.00001274061,"domain_scores_codex":[0.9988016,0.0001714381,0.0004434952,0.0002898487,0.0001059486,0.0001876065],"domain_scores_gemma":[0.9992198,0.00004717269,0.0002428758,0.0003106763,0.0001013507,0.00007812303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000559307,0.00006856002,0.02639727,0.0001036404,0.00003171363,5.74052e-7,0.0001324721,0.00001341911,0.9723691,0.000306406,0.0001593498,0.0003615639],"study_design_scores_gemma":[0.0007487921,0.001618968,0.09626018,0.00002851771,0.00004103663,0.000009876628,0.0006696529,0.00001735338,0.8863312,0.0002856646,0.01373696,0.0002518101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974388,0.000498657,0.0001744295,0.0004876425,0.00009928049,0.000152679,0.0001051349,0.000008165875,0.001035136],"genre_scores_gemma":[0.9978162,0.0002481918,0.0003487701,0.0006878077,0.0001872155,0.000008546403,0.00007331307,0.00001258126,0.0006173661],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08603791,"threshold_uncertainty_score":0.4233165,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0220756623367869,"score_gpt":0.2686057531540815,"score_spread":0.2465300908172946,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}