{"id":"W3038895516","doi":"10.3390/microorganisms8070994","title":"Mycobacterium avium Subspecies paratuberculosis Infects and Replicates within Human Monocyte-Derived Dendritic Cells","year":2020,"lang":"en","type":"article","venue":"Microorganisms","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"University of British Columbia","keywords":"Mycobacterium avium subspecies paratuberculosis; Biology; Paratuberculosis; Immune system; Immunology; Dendritic cell; Downregulation and upregulation; Microbiology; Virology; Mycobacterium","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001410365,0.0003354238,0.0005436756,0.0001010969,0.0002146734,0.0002000262,0.0001699022,0.0001758358,0.0009869324],"category_scores_gemma":[0.0001936344,0.0003055641,0.0001108483,0.0003139587,0.0002165553,0.0001657565,0.0002260219,0.00037578,0.0005850931],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007251166,"about_ca_system_score_gemma":0.00009212039,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009750636,"about_ca_topic_score_gemma":0.00001979987,"domain_scores_codex":[0.9979961,0.00008453405,0.0004063878,0.0006770446,0.0002759081,0.0005600516],"domain_scores_gemma":[0.99842,0.0001102339,0.00009666875,0.0004481639,0.0001439757,0.0007809757],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001040712,0.0001100609,0.03373773,0.000305194,0.00008348796,0.0001423226,0.001261481,2.79105e-7,0.9584832,0.00009453342,0.005596299,0.0000813189],"study_design_scores_gemma":[0.001203373,0.0006584027,0.07861058,0.00007198236,0.0001309809,0.00008253702,0.0002647575,0.000009143841,0.9161907,0.00006390851,0.00242107,0.0002925437],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932031,0.0006851883,0.000033134,0.004616555,0.0001062124,0.0005681064,0.00004536822,0.0002265172,0.0005158237],"genre_scores_gemma":[0.9948557,0.0003734086,0.000887375,0.003123274,0.0003320516,0.00004704549,0.00008916814,0.00007687377,0.0002151311],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04487284,"threshold_uncertainty_score":0.9999396,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02737766819753522,"score_gpt":0.2670944297134758,"score_spread":0.2397167615159406,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}