{"id":"W3039087757","doi":"10.1534/g3.120.401149","title":"The Genome Sequence of the Jean-Talon Strain, an Archeological Beer Yeast from Québec, Reveals Traces of Adaptation to Specific Brewing Conditions","year":2020,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lallemand (Canada); Université Laval; PROTEO","funders":"","keywords":"Brewing; Strain (injury); Genome; Yeast; Whole genome sequencing; Saccharomyces cerevisiae; Domestication; Biology; Genetics; Gene; Fermentation; Food science; Anatomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001270076,0.000116974,0.000179447,0.000009041065,0.0002443778,0.00003762854,0.0004446805,0.00005376787,0.0003581149],"category_scores_gemma":[0.00001872386,0.00004420499,0.0001244763,0.0003397521,0.000187695,0.00003846808,0.00006750075,0.00006791975,0.00001392039],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001787898,"about_ca_system_score_gemma":0.00002067114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003751791,"about_ca_topic_score_gemma":0.003174602,"domain_scores_codex":[0.9987619,0.0002033409,0.0003679502,0.0002510852,0.000250643,0.0001650957],"domain_scores_gemma":[0.9992669,0.0002056288,0.0001786892,0.000119024,0.0001161502,0.0001135941],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001631011,0.0000220473,0.002245351,0.000002492887,0.00002486115,5.487062e-7,0.001694359,0.006178592,0.8306012,0.00006324723,0.00001894443,0.1591321],"study_design_scores_gemma":[0.0004071317,0.001188313,0.7168301,0.00002585313,0.0002236082,0.000004647373,0.03696809,0.005459673,0.06211838,0.002018275,0.1740363,0.0007195552],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.979839,0.01468498,0.00006787266,0.00415843,0.00005298054,0.0002274749,0.0009059075,0.00001411137,0.00004924331],"genre_scores_gemma":[0.9945989,0.003972732,0.0004796344,0.0004816704,0.000147202,0.000007605622,0.0001892675,0.000001628644,0.000121368],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7684827,"threshold_uncertainty_score":0.3921107,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0997196215510321,"score_gpt":0.2611525226629215,"score_spread":0.1614329011118894,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}