{"id":"W3039519679","doi":"10.1101/2020.06.30.180232","title":"Regulatory effects of the <i>Uty</i> / <i>Ddx3y</i> locus on neighboring chromosome Y genes and autosomal mRNA transcripts in adult mouse non-reproductive cells","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Biology; Gene; Genetics; Y chromosome; Locus (genetics); X-inactivation; Somatic cell; Genome; Transcriptome; Intron; Gene expression; X chromosome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001098669,0.0002538394,0.0001959992,0.0002704134,0.0001103521,0.000249848,0.0001545982,0.0002094599,0.001219073],"category_scores_gemma":[0.00008542165,0.0001786354,0.0002191462,0.0001208568,0.0002568597,0.00009591922,0.0003229266,0.0003602969,0.0003138878],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001956678,"about_ca_system_score_gemma":0.0001226965,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005707377,"about_ca_topic_score_gemma":0.001399155,"domain_scores_codex":[0.9997864,0.000025077,0.00001569333,0.00008996682,0.00004279017,0.00004001218],"domain_scores_gemma":[0.9997981,0.00002883221,0.0000977356,0.00001764428,0.00001306553,0.0000446141],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002683585,0.000002349245,0.0002398807,0.000006326684,0.000001479557,0.00001775486,0.000004194528,0.000009805308,0.9994837,0.00001279162,0.000005991727,0.00018894],"study_design_scores_gemma":[0.00001253932,0.0001985186,0.07936814,0.0000086613,0.00002008488,0.0002851687,0.00007887305,0.0005714297,0.9179397,0.00003772465,0.001471428,0.000007696779],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952453,0.000889411,0.002162687,0.00003362761,0.00001494304,0.00001254498,0.0008556935,0.00008628856,0.0006995265],"genre_scores_gemma":[0.9940333,0.000347227,0.001614822,0.0000792009,0.000006392363,0.0000286183,0.001087871,0.0001036207,0.002698925],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001219073,"threshold_uncertainty_score":0.00407815,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006803945810197624,"score_gpt":0.2010234740265123,"score_spread":0.1942195282163146,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}