{"id":"W3039822369","doi":"10.1021/acs.analchem.0c02148","title":"rPTMDetermine: A Fully Automated Methodology for Endogenous Tyrosine Nitration Validation, Site-Localization, and Beyond","year":2020,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Windsor; York University","funders":"University of Hong Kong","keywords":"Chemistry; Deamidation; Monoisotopic mass; Computational biology; In silico; Tandem mass spectrometry; Proteome; Combinatorial chemistry; Mass spectrometry; Chromatography; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002244325,0.001242075,0.0009051636,0.001360228,0.0004890484,0.001171789,0.001249504,0.0007845736,0.001466531],"category_scores_gemma":[0.003036168,0.0005633126,0.0008373225,0.0005488456,0.0005836897,0.0008725201,0.001334662,0.001062445,0.001294677],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000335392,"about_ca_system_score_gemma":0.0007778102,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006588742,"about_ca_topic_score_gemma":0.0009765886,"domain_scores_codex":[0.998534,0.0002870309,0.00009490132,0.0005047565,0.00049207,0.00008724821],"domain_scores_gemma":[0.9982589,0.0005468376,0.0003564485,0.0004118507,0.0003584437,0.00006760569],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000313784,0.00009583124,0.00271354,0.0003983482,0.0001548302,0.0002721107,0.0001170232,0.003685848,0.8346252,0.000634903,0.001323422,0.1556652],"study_design_scores_gemma":[0.00005719095,0.0004753801,0.009465368,0.00004865449,0.00008907464,0.002040314,0.00006282156,0.1619537,0.8109118,0.0014502,0.01327067,0.0001749501],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.09640972,0.001039387,0.8904792,0.000096741,0.00004744246,0.0001977684,0.0009769424,0.009860405,0.000892405],"genre_scores_gemma":[0.1676393,0.0003558802,0.8280128,0.0001213304,0.00002375574,0.0003664613,0.001678021,0.0006734665,0.001128993],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002244325,"threshold_uncertainty_score":0.01186925,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05923055613463104,"score_gpt":0.3200890754312036,"score_spread":0.2608585192965726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}