{"id":"W3040344509","doi":"10.1139/gen-2019-0227","title":"Whole-genome sequencing association analysis reveals the genetic architecture of meat quality traits in Chinese Qingyu pigs","year":2020,"lang":"en","type":"article","venue":"Genome","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Single-nucleotide polymorphism; Genetic architecture; Genome-wide association study; Genetics; Breed; Genetic association; Gene; Quantitative trait locus; Genotype","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005333617,0.0003024643,0.000297915,0.0005804443,0.0003672568,0.0002414325,0.0001958348,0.0002765932,0.001474582],"category_scores_gemma":[0.0004012138,0.0001753619,0.0005484147,0.0007828093,0.0002609581,0.00009946002,0.0002489979,0.0001927509,0.00006831242],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001725283,"about_ca_system_score_gemma":0.0002336218,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006606612,"about_ca_topic_score_gemma":0.01043388,"domain_scores_codex":[0.9997843,0.00004702592,0.00001955348,0.00008493679,0.00002373147,0.00004046526],"domain_scores_gemma":[0.9997122,0.00009359808,0.00007992792,0.00003489246,0.00002522993,0.00005409205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001547899,0.00006939596,0.8251656,0.000189054,0.001314291,0.002133485,0.0008493677,0.001202643,0.1506416,0.0002211216,0.000386933,0.01627852],"study_design_scores_gemma":[0.000009967192,0.0000289883,0.9985895,0.000002826729,0.000106571,0.0001347294,0.00005052878,0.0004887368,0.0004163109,0.0000213822,0.00014683,0.000003733596],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992975,0.00009622217,0.0003040574,0.00001477066,0.000002108943,0.000002546723,0.0001809345,0.000003437567,0.00009842296],"genre_scores_gemma":[0.9992112,0.00004851909,0.0002182898,0.0000191944,0.000003473972,0.000005549206,0.000276222,0.000004035416,0.0002134073],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006606612,"threshold_uncertainty_score":0.01313633,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01625274352291497,"score_gpt":0.253318298787696,"score_spread":0.237065555264781,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}