{"id":"W3040703769","doi":"10.1164/ajrccm-conference.2020.201.1_meetingabstracts.a2940","title":"Multi ‘Omics Profiling of the HIV Airway Epithelium: Integration of the Microbiome, Methylome, and Transcriptome","year":2020,"lang":"en","type":"article","venue":"","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Pacific Centre for Reproductive Medicine; St. Paul's Hospital","funders":"","keywords":"Transcriptome; Profiling (computer programming); Omics; Microbiome; Computational biology; Metagenomics; Human immunodeficiency virus (HIV); Biology; Computer science; Bioinformatics; Immunology; Genetics; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006184392,0.000392503,0.000640791,0.00107857,0.0004996153,0.001483761,0.0002466925,0.0005660216,0.001446632],"category_scores_gemma":[0.0005490588,0.0002172814,0.0005709502,0.0009906593,0.0002454846,0.0005881352,0.0008222148,0.0006463638,0.0004036314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003142084,"about_ca_system_score_gemma":0.00048346,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001786933,"about_ca_topic_score_gemma":0.003945916,"domain_scores_codex":[0.999532,0.00008358173,0.00003326681,0.0001351822,0.0001449338,0.00007117382],"domain_scores_gemma":[0.9997728,0.00005956937,0.00004995625,0.00003114835,0.00005883434,0.00002764469],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004228086,0.00004864969,0.04212181,0.000519171,0.0004259484,0.0001852901,0.0002292,0.0005876183,0.9261172,0.0003911922,0.001019974,0.02793105],"study_design_scores_gemma":[0.00003149196,0.0005519044,0.632552,0.00031188,0.00070795,0.001509649,0.001254109,0.009876453,0.3256102,0.002898837,0.02459774,0.00009787564],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.931977,0.01641639,0.0226087,0.001711213,0.0002394141,0.00009737356,0.02162442,0.0003423195,0.004983109],"genre_scores_gemma":[0.9478111,0.006675466,0.02780042,0.001444125,0.0001682584,0.000119831,0.01211111,0.00009463225,0.003775057],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001786933,"threshold_uncertainty_score":0.00483948,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02606914237580385,"score_gpt":0.2576246872494168,"score_spread":0.2315555448736129,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}