{"id":"W3040783232","doi":"10.1186/s12864-020-06848-9","title":"Quantitative characterization of tumor cell-free DNA shortening","year":2020,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"MaRS","funders":"Department of Education of Guangdong Province","keywords":"Biology; Cell-free fetal DNA; DNA sequencing; Chromatin; Nucleosome; DNA; Cancer research; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005309162,0.0001064634,0.0001379495,0.00001787231,0.00003136465,0.00001499945,0.0002107267,0.00005296733,0.00001076016],"category_scores_gemma":[0.0001047854,0.0001206232,0.00007124862,0.00005961935,0.00003621402,0.000002398811,0.000164305,0.00004176299,0.000008404296],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001273641,"about_ca_system_score_gemma":0.0001458855,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007470642,"about_ca_topic_score_gemma":0.00002093827,"domain_scores_codex":[0.9993446,0.00001770452,0.0002162079,0.0002292816,0.00006109291,0.0001310403],"domain_scores_gemma":[0.9994573,0.00001559671,0.0001385576,0.0002403524,0.00006997864,0.00007824112],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001336133,0.00002235788,0.00189864,0.00003738327,0.00001324172,0.000001022191,0.0001760851,0.0003009104,0.9967116,0.0002343142,0.0003295883,0.0001412898],"study_design_scores_gemma":[0.0005333914,0.0003913697,0.002282464,0.000004695255,0.00002547746,0.000001672295,0.0001789868,0.001842459,0.9835833,0.00004482961,0.01093292,0.0001784833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9732047,0.0002002276,0.02558475,0.00008598292,0.0001060544,0.0001438808,0.0002107104,0.000006448036,0.0004572721],"genre_scores_gemma":[0.9887956,0.0001752051,0.009880504,0.0005651602,0.0002323274,0.000007567609,0.0002777398,0.00002821755,0.00003763049],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01570425,"threshold_uncertainty_score":0.4918871,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02016104556638714,"score_gpt":0.2332866055511797,"score_spread":0.2131255599847926,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}