{"id":"W3041158598","doi":"10.3390/pathogens9070559","title":"Identification of A Putative T6SS Immunity Islet in Salmonella Typhi","year":2020,"lang":"en","type":"article","venue":"Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta","keywords":"Salmonella typhi; Biology; Salmonella enterica; Typhoid fever; Serotype; Microbiology; Comparative genomics; Immunity; Salmonella; Pathogen; Gene; Virology; Genome; Immune system; Genomics; Genetics; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017366,0.0002847668,0.0003622464,0.0004564347,0.0001751754,0.0004805812,0.0001431748,0.0003557015,0.000832814],"category_scores_gemma":[0.0004067433,0.0001361752,0.0007540862,0.0004369342,0.0002549556,0.0001839939,0.000313713,0.0003624505,0.0004160655],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001813382,"about_ca_system_score_gemma":0.000234398,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005571122,"about_ca_topic_score_gemma":0.0005040041,"domain_scores_codex":[0.9999205,0.00001270665,0.000005792536,0.00002396026,0.00002081199,0.00001617677],"domain_scores_gemma":[0.9997017,0.00008817935,0.00008864317,0.00001825181,0.00003105407,0.00007204866],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001039286,0.0001578546,0.05252745,0.0002899182,0.00005763646,0.001707901,0.0002512754,0.001779049,0.9346602,0.0004442352,0.0001450449,0.006940083],"study_design_scores_gemma":[0.0001161176,0.002306602,0.4717903,0.0001852995,0.0004237854,0.007651285,0.001669027,0.02756828,0.4767378,0.00128027,0.01018073,0.00009051656],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955277,0.0002631404,0.00281536,0.00004914982,0.00001468078,0.00002235648,0.0006685979,0.00005496692,0.0005839462],"genre_scores_gemma":[0.9923027,0.000146458,0.004734444,0.0000474074,0.000007812085,0.00001216546,0.002347228,0.00001717051,0.0003847074],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000832814,"threshold_uncertainty_score":0.0027861,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0388072378472834,"score_gpt":0.2486703234567617,"score_spread":0.2098630856094783,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}