{"id":"W3041158598","doi":"10.3390/pathogens9070559","title":"Identification of A Putative T6SS Immunity Islet in Salmonella Typhi","year":2020,"lang":"en","type":"article","venue":"Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta","keywords":"Salmonella typhi; Biology; Salmonella enterica; Typhoid fever; Serotype; Microbiology; Comparative genomics; Immunity; Salmonella; Pathogen; Gene; Virology; Genome; Immune system; Genomics; Genetics; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003133891,0.00008142008,0.0001967685,0.000008431605,0.00003443141,0.000006510621,0.0001728459,0.00007207099,0.00009038464],"category_scores_gemma":[0.0002511417,0.00003543397,0.00006645504,0.0003517827,0.00005056347,0.00003909134,0.00005030611,0.00009542407,0.00005095833],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001023447,"about_ca_system_score_gemma":0.000005221128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001074356,"about_ca_topic_score_gemma":0.00003759842,"domain_scores_codex":[0.999009,0.0002429054,0.0003201001,0.0001972657,0.00007545714,0.0001552435],"domain_scores_gemma":[0.9994928,0.0002241339,0.0001363823,0.00004414899,0.00004485053,0.00005766411],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002739812,0.0000399517,0.03613943,0.000005087186,0.000005096803,0.000004108074,0.0006832796,0.00001411378,0.9555767,0.0001450969,0.00005147383,0.007308333],"study_design_scores_gemma":[0.0001384156,0.0001870821,0.9364089,0.000006324216,0.00001124382,0.000003942294,0.001724243,0.0005594752,0.05842538,0.001234607,0.00114499,0.0001553325],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973969,0.0001461582,0.00002667552,0.001616067,0.00004346258,0.0001164319,0.00011304,0.0000223053,0.0005189831],"genre_scores_gemma":[0.9993859,0.00005176735,0.0000317603,0.0003583338,0.00007181944,0.000008542826,0.00007274334,6.506723e-7,0.00001848617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9002695,"threshold_uncertainty_score":0.1444955,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0388072378472834,"score_gpt":0.2486703234567617,"score_spread":0.2098630856094783,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}