{"id":"W3041323680","doi":"10.3389/fmicb.2020.01594","title":"Burkholderia cepacia Complex Taxon K: Where to Split?","year":2020,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Fonds Wetenschappelijk Onderzoek; Belgian Federal Science Policy Office; Vlaamse regering; Universiteit Gent; Cystic Fibrosis Canada; University of Oxford; Vlaams Supercomputer Centrum; Wellcome Trust; Cystic Fibrosis Foundation","keywords":"Clade; Multilocus sequence typing; Biology; Burkholderia cepacia complex; Taxon; Phylogenetic tree; Phylogenetics; Microbiology; Burkholderia; Genetics; Genotype; Ecology; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001148997,0.0001740089,0.0005211852,0.0001497605,0.00003640667,0.00001256489,0.000218478,0.0001247033,0.0005788371],"category_scores_gemma":[0.0003197433,0.0001609532,0.00006951445,0.0003871014,0.0001801765,0.00004013637,0.000142038,0.0002891613,0.0002789804],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000138681,"about_ca_system_score_gemma":0.00007920007,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003339018,"about_ca_topic_score_gemma":0.0000399999,"domain_scores_codex":[0.998557,0.00009016548,0.0002872206,0.0004611356,0.00007154761,0.0005329531],"domain_scores_gemma":[0.9993249,0.00003632956,0.00004313161,0.0002446825,0.00005674069,0.0002942725],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005508624,0.00003071436,0.0178738,0.0000787723,0.00002627797,0.00005151623,0.0002214296,0.00001047464,0.6340303,0.00002175642,0.3445015,0.002602631],"study_design_scores_gemma":[0.001773558,0.0008471985,0.01678875,0.00008591024,0.0000156392,0.00006478753,0.0005935087,0.0002518959,0.01456289,0.00008718588,0.9647035,0.0002251762],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8995641,0.005219416,0.03885974,0.04788713,0.001612003,0.002617844,0.0003545425,0.000240137,0.003645109],"genre_scores_gemma":[0.6428214,0.000166612,0.3479104,0.007433615,0.0004097722,0.00007023088,0.0002977993,0.000057954,0.0008322604],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.620202,"threshold_uncertainty_score":0.6563482,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0252815078910434,"score_gpt":0.2918137104840365,"score_spread":0.2665322025929932,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}