{"id":"W3041495679","doi":"10.3390/microorganisms8071016","title":"The Salmonella enterica Plasmidome as a Reservoir of Antibiotic Resistance","year":2020,"lang":"en","type":"article","venue":"Microorganisms","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ste. Anne's Hospital; Wilfrid Laurier University; Public Health Agency of Canada; Université Laval; Université de Montréal; University of Guelph; Fonds de Recherche du Québec – Nature et Technologies; University of Calgary; McGill University; Health Canada","funders":"Genome Canada; Health Canada; Genome British Columbia; Université Laval","keywords":"Salmonella enterica; Nanopore sequencing; Plasmid; Minion; Biology; Salmonella; Genetics; Genome; Whole genome sequencing; Antibiotic resistance; Gene; Serotype; Computational biology; Microbiology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002323078,0.0003312499,0.0002390574,0.0007791515,0.0002362511,0.0005894981,0.0001376503,0.0002848073,0.0008552485],"category_scores_gemma":[0.0005067704,0.000216916,0.0002185036,0.0005606164,0.000206822,0.0003747461,0.0003793928,0.0002385174,0.0005520112],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002415373,"about_ca_system_score_gemma":0.0003268063,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00138209,"about_ca_topic_score_gemma":0.001620042,"domain_scores_codex":[0.9998287,0.00002182085,0.00001325545,0.00005640778,0.00004936141,0.0000304774],"domain_scores_gemma":[0.9996547,0.00005830154,0.0001161672,0.00003345968,0.00009239307,0.000045058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003666181,0.00005481295,0.06727877,0.0002965631,0.0000513514,0.0002723111,0.0003024036,0.0009457669,0.8942693,0.0005437931,0.0004622085,0.03515609],"study_design_scores_gemma":[0.00002579047,0.0008768425,0.6243239,0.0001372769,0.0002874531,0.001961326,0.0009862258,0.02505321,0.3231631,0.001187031,0.02192874,0.00006913614],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9889263,0.00112057,0.007213708,0.0001035874,0.00001706212,0.0000167684,0.001011622,0.000197622,0.001392588],"genre_scores_gemma":[0.9877002,0.0006007974,0.008223996,0.00004270182,0.000008547118,0.00001461581,0.002360441,0.00003362365,0.001015022],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00138209,"threshold_uncertainty_score":0.002861083,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01843119049776115,"score_gpt":0.2115761140498886,"score_spread":0.1931449235521274,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}