{"id":"W3041503826","doi":"10.1186/s13567-020-00813-w","title":"Population structure, genetic diversity and pathotypes of Streptococcus suis isolated during the last 13 years from diseased pigs in Switzerland","year":2020,"lang":"en","type":"article","venue":"Veterinary Research","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Universität Zürich","keywords":"Streptococcus suis; Multilocus sequence typing; Biology; Virulence; Population; Microbiology; Serotype; Genetic diversity; Genetics; Pathogen; Typing; Virulence factor; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005069597,0.00007255074,0.0001423148,0.00008823364,0.0001742647,0.00001300383,0.0000588863,0.00004688008,0.0001634786],"category_scores_gemma":[0.00005023869,0.00005346625,0.0000304664,0.0002920735,0.00007103434,0.0000418795,0.0003091641,0.0001724261,0.000004625576],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003900294,"about_ca_system_score_gemma":0.00001593745,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002828798,"about_ca_topic_score_gemma":0.0001307909,"domain_scores_codex":[0.9991947,0.0001092763,0.0001266657,0.0002063243,0.0002083701,0.0001545951],"domain_scores_gemma":[0.9995961,0.00007222781,0.0000270305,0.0001561435,0.00004372301,0.0001047359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005494577,0.00005733013,0.9834176,0.00005117397,0.00003982177,0.000193402,0.000409305,0.00001218848,0.01433329,9.764406e-7,0.000005272243,0.0009301749],"study_design_scores_gemma":[0.001262987,0.0008153981,0.9968305,0.00004322958,0.00001869769,0.000006946178,0.00008723837,0.0007015514,0.0001134912,0.00006172543,0.00001485361,0.00004338673],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991567,0.000141049,0.000002184378,0.00006018182,0.00001647241,0.0005013309,0.00008778487,0.00001354099,0.00002079969],"genre_scores_gemma":[0.9998149,0.00003663384,0.00002827112,0.000007842299,0.00003837994,0.00001257413,0.00003632589,0.000008222583,0.0000168763],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0142198,"threshold_uncertainty_score":0.4276315,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06914238182465515,"score_gpt":0.333454762871448,"score_spread":0.2643123810467928,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}