{"id":"W3041794894","doi":"10.1053/j.gastro.2020.07.005","title":"Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease","year":2020,"lang":"en","type":"article","venue":"Gastroenterology","topic":"Liver Disease Diagnosis and Treatment","field":"Medicine","cited_by":206,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta","funders":"National Center for Advancing Translational Sciences; National Institute of Environmental Health Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute on Alcohol Abuse and Alcoholism; AstraZeneca; Allergan; National Institutes of Health; Ferring Research Institute; Marga und Walter Boll-Stiftung; Novo Nordisk; Deutsche Forschungsgemeinschaft; U.S. Department of Veterans Affairs; University of California, San Diego; CymaBay Therapeutics; Boehringer Ingelheim; Siemens USA; Bristol-Myers Squibb; NGM Biopharmaceuticals; Pfizer; Université Catholique de Louvain; Intercept Pharmaceuticals; Gilead Sciences; Universität zu Köln; Axial Biotherapeutics; U.S. Department of Defense; Biomedical Laboratory Research and Development, VA Office of Research and Development","keywords":"Nonalcoholic fatty liver disease; Human virome; Internal medicine; Microbiome; Gastroenterology; Confidence interval; Medicine; Cirrhosis; Dried blood spot; Liver disease; Fibrosis; Fatty liver; Metagenomics; Disease; Biology; Bioinformatics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003334591,0.000162865,0.0003505078,0.00003694456,0.00002567791,0.000004126052,0.00007864632,0.0000473603,0.0002496224],"category_scores_gemma":[0.00009325153,0.0001216423,0.000117997,0.00009150069,0.0001343022,0.00004148025,0.00005785688,0.0001683401,0.00001886109],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004589256,"about_ca_system_score_gemma":0.00005616957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001751125,"about_ca_topic_score_gemma":0.00001653805,"domain_scores_codex":[0.9990272,0.00007488892,0.0001709087,0.0002810007,0.0001919264,0.0002540963],"domain_scores_gemma":[0.9991606,0.00004301501,0.0001079333,0.0001529711,0.0001035944,0.0004318145],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003408465,0.001026443,0.9931098,0.00006694903,0.0004101656,0.0008295836,0.0001225508,0.00001394074,0.000294057,0.00001625467,0.0005805496,0.000121206],"study_design_scores_gemma":[0.003088912,0.002623102,0.992946,0.00009759648,0.0006107144,0.00002784698,0.00001309529,0.0003560598,0.0001350863,0.000008796736,0.00003815104,0.00005461805],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957016,0.0001407245,0.0001399258,0.003449886,0.00002356652,0.0002944151,0.0001483805,0.00004441884,0.00005706892],"genre_scores_gemma":[0.9948268,0.00001915616,0.0002477301,0.004624922,0.00005595764,0.00003158812,0.0001663312,0.00001577443,0.00001173427],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001596658,"threshold_uncertainty_score":0.496043,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01811783713010611,"score_gpt":0.2298331907185606,"score_spread":0.2117153535884544,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}