{"id":"W3041794894","doi":"10.1053/j.gastro.2020.07.005","title":"Intestinal Virome Signature Associated With Severity of Nonalcoholic Fatty Liver Disease","year":2020,"lang":"en","type":"article","venue":"Gastroenterology","topic":"Liver Disease Diagnosis and Treatment","field":"Medicine","cited_by":206,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta","funders":"National Center for Advancing Translational Sciences; National Institute of Environmental Health Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute on Alcohol Abuse and Alcoholism; AstraZeneca; Allergan; National Institutes of Health; Ferring Research Institute; Marga und Walter Boll-Stiftung; Novo Nordisk; Deutsche Forschungsgemeinschaft; U.S. Department of Veterans Affairs; University of California, San Diego; CymaBay Therapeutics; Boehringer Ingelheim; Siemens USA; Bristol-Myers Squibb; NGM Biopharmaceuticals; Pfizer; Université Catholique de Louvain; Intercept Pharmaceuticals; Gilead Sciences; Universität zu Köln; Axial Biotherapeutics; U.S. Department of Defense; Biomedical Laboratory Research and Development, VA Office of Research and Development","keywords":"Nonalcoholic fatty liver disease; Human virome; Internal medicine; Microbiome; Gastroenterology; Confidence interval; Medicine; Cirrhosis; Dried blood spot; Liver disease; Fibrosis; Fatty liver; Metagenomics; Disease; Biology; Bioinformatics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002484233,0.0002433068,0.0003117277,0.0008584739,0.0001666312,0.0006217489,0.0001609743,0.0003345563,0.002242333],"category_scores_gemma":[0.0008595277,0.00010979,0.0003579458,0.0005740621,0.0001760884,0.0002830431,0.0004944156,0.0004358513,0.0002545888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002302372,"about_ca_system_score_gemma":0.0001108807,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005224344,"about_ca_topic_score_gemma":0.0009125937,"domain_scores_codex":[0.9997703,0.00004862775,0.00002796561,0.00004355659,0.00004371948,0.00006574686],"domain_scores_gemma":[0.9994339,0.00008140571,0.0002885984,0.00002481906,0.0000587357,0.000112562],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002220077,0.0000579836,0.9534907,0.0001122231,0.0002477472,0.0003828484,0.00006422688,0.0002359662,0.02818505,0.0001441572,0.000407235,0.01445167],"study_design_scores_gemma":[0.0000141712,0.0001441644,0.9958662,0.00001980311,0.00007714929,0.0008572535,0.0001020327,0.0007583454,0.00142434,0.0001438069,0.0005828621,0.000009879215],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997062,0.0008177169,0.0003057852,0.00006528791,0.00001925864,0.0000126895,0.0005296202,0.00001466428,0.001172942],"genre_scores_gemma":[0.9983182,0.0001722547,0.0004013159,0.0000492399,0.0000193104,0.000007337063,0.0006254864,0.000004638837,0.0004023091],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002242333,"threshold_uncertainty_score":0.007501304,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01811783713010611,"score_gpt":0.2298331907185606,"score_spread":0.2117153535884544,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}