{"id":"W3042104358","doi":"10.17504/protocols.io.bhwdj7a6","title":"SARS-CoV-2 EBI submission protocol: ENA, BioSample, and BioProject v1","year":2020,"lang":"en","type":"preprint","venue":"","topic":"Biomedical Text Mining and Ontologies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Protocol (science); Biology; Metadata; Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); 2019-20 coronavirus outbreak; Computer science; Computational biology; World Wide Web; Virology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02024731,0.001993763,0.002368037,0.00402944,0.004011897,0.006523346,0.004626658,0.003026553,0.2223854],"category_scores_gemma":[0.03853014,0.003050762,0.001310707,0.003265111,0.001309029,0.004570249,0.006807348,0.005226607,0.3467273],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002408058,"about_ca_system_score_gemma":0.007578245,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00287223,"about_ca_topic_score_gemma":0.003418379,"domain_scores_codex":[0.9855012,0.004405892,0.003049216,0.001643092,0.004115807,0.001284775],"domain_scores_gemma":[0.974503,0.004785425,0.001214814,0.009239669,0.008821129,0.001436001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009563584,0.0001637335,0.0007607525,0.001195597,0.00005828145,0.0001770118,0.0003843007,0.0001684024,0.01985883,0.006133432,0.9462308,0.02391251],"study_design_scores_gemma":[0.0001808863,0.0000998446,0.001537865,0.0004653647,0.00002886435,0.0002612328,0.0002513391,0.0004149514,0.02489055,0.003937433,0.9678371,0.00009466702],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"protocol","genre_scores_codex":[0.005982845,0.001721419,0.220323,0.005512577,0.004299934,0.02621304,0.5869808,0.06592911,0.08303725],"genre_scores_gemma":[0.006431015,0.0009611793,0.125519,0.002423886,0.0005705287,0.03226979,0.7536308,0.02589203,0.05230169],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.2223854,"threshold_uncertainty_score":0.7439532,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07670131585770588,"score_gpt":0.363572556718384,"score_spread":0.2868712408606781,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}